Open diekhans opened 1 year ago
Copy and paste the exact command you tried to run
../flair/bin/diffsplice_fishers_exact known_diffSplice/flair.diffsplice.ir.events.quant.tsv H0C H0N known_fisher/out.fishers.H0C.H0N.flair.diffsplice.ir.events.quant.tsv
however, the input file does not exist known_diffSplice/flair.diffsplice.ir.events.quant.tsv
How did you install Flair?
What happened?
usage: diffsplice_fishers_exact events.quant.tsv colname1 colname2 out.fishers.tsv
which seems to indicate a parameter is missing instead of the input file missing
What else do we need to know? This program doesn't use argparse and handles errors in a manner that requires users to read the code to understand what it did wrong.
this will also happen with diff_iso_usage, maybe others
Copy and paste the exact command you tried to run
however, the input file does not exist known_diffSplice/flair.diffsplice.ir.events.quant.tsv
How did you install Flair?
What happened?
which seems to indicate a parameter is missing instead of the input file missing
What else do we need to know? This program doesn't use argparse and handles errors in a manner that requires users to read the code to understand what it did wrong.