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BrooksLabUCSC / flair

Full-Length Alternative Isoform analysis of RNA
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How to count the isoforms corresponding to each gene. #329

Closed anxuan-web closed 7 months ago

anxuan-web commented 7 months ago

Hi, I want to count the number of isoforms per gene.

As shown in the figure. How do I try. image

I have get the collapse.isoforms.gtf file.

Jeltje commented 7 months ago

grep -P '\ttranscript\t' test_output/collapse.isoforms.gtf | cut -f2 -d'"' | uniq -c

anxuan-web commented 7 months ago

Thanks!