Getting the command not found error while using psl_to_sequence. It looks like it's required for variant integration with the "Any VCF" option. It looks like this function is not in the source code.
What else do we need to know?
It is also unclear to me what this function is supposed to do since a description is not given in the documentation.
Copy and paste the exact command you tried to run psl_to_sequence $out_bed $REFERENCE_FASTA $out_fa -v $out_vcf
How did you install Flair? (We'd prefer it if you used one of the top two because they are the least likely to have package compatibility problems.)
conda create -n flair -c conda-forge -c bioconda flair)What happened?
Getting the command not found error while using
psl_to_sequence. It looks like it's required for variant integration with the "Any VCF" option. It looks like this function is not in the source code.What else do we need to know?
It is also unclear to me what this function is supposed to do since a description is not given in the documentation.
Thanks! Sowmya