Copy and paste the exact command you tried to run
Feel free to leave any original paths, we don't have access to your system
flair correct -q /home/dragon/Database/Guoyingyu/1_flair.aligned.bed -f /home/dragon/Database/Guoyingyu/Homo_sapiens.GRCh38.111.gtf -g /home/dragon/Database/Guoyingyu/Homo_sapiens.GRCh38.dna.toplevel.fa
How did you install Flair?1. bioconda
(We'd prefer it if you used one of the top two because they are the least likely to have package compatibility problems.)
File "/home/dragon/Database/Guoyingyu/.local/lib/python3.6/site-packages/flair/ssCorrect.py", line 423, in <module>
main()
File "/home/dragon/Database/Guoyingyu/.local/lib/python3.6/site-packages/flair/ssCorrect.py", line 402, in main
with open(os.path.join(tempDir, "%s_inconsistent.bed" % chrom),'rb') as fd:
FileNotFoundError: [Errno 2] No such file or directory: '/home/dragon/Database/Guoyingyu/ef3ebff9-6175-4b23-8bdf-e85042d809b8/1_inconsistent.bed'
Correction command did not exit with success status:
/usr/bin/python3 /home/dragon/Database/Guoyingyu/.local/lib/python3.6/site-packages/flair/ssCorrect.py -i /home/dragon/Database/Guoyingyu/2_flair.aligned.bed -w 15 -p 4 -o flair --progress -f /home/dragon/Database/Guoyingyu/Homo_sapiens.GRCh38.dna.toplevel.fa -g /home/dragon/Database/Guoyingyu/Homo_sapiens.GRCh38.111.gtf --print_check
We know it's ugly but we promise it helps us solve problems faster.
What else do we need to know?
Go ahead, every bit helps.
Copy and paste the exact command you tried to run Feel free to leave any original paths, we don't have access to your system flair correct -q /home/dragon/Database/Guoyingyu/1_flair.aligned.bed -f /home/dragon/Database/Guoyingyu/Homo_sapiens.GRCh38.111.gtf -g /home/dragon/Database/Guoyingyu/Homo_sapiens.GRCh38.dna.toplevel.fa How did you install Flair?1. bioconda (We'd prefer it if you used one of the top two because they are the least likely to have package compatibility problems.)
conda create -n flair -c conda-forge -c bioconda flair
)docker pull brookslab/flair:latest
conda env create -f misc/flair_basic_conda_env.yaml
What happened?
We know it's ugly but we promise it helps us solve problems faster.
What else do we need to know? Go ahead, every bit helps.