BrownBiomechanics / SlicerAutoscoperM

This 3D Slicer extension enables users to perform image registration.
https://autoscoperm.slicer.org
MIT License
0 stars 3 forks source link

Register sample data for AutoscoperM #27

Closed NicerNewerCar closed 1 year ago

NicerNewerCar commented 1 year ago

ToDo:

NicerNewerCar commented 1 year ago

@amymmorton When you are testing this branch, please make sure to download the sample data from the Sampe Data module in slicer.

jcfr commented 1 year ago

Considering renaming the asset in the sample data release to include the prefix YYYY-MM-DD-

NicerNewerCar commented 1 year ago

Considering renaming the asset in the sample data release to include the prefix YYYY-MM-DD-

Sample data has been updated to 2023-05-25-{Wrist,Knee,Ankle}

amymmorton commented 1 year ago

It had been a little while since last testing- so let me know if need to approach differently:

checkout sample-data branch pr#27 in github desktop-

githubDeskt_pr27

pull repository. cmake with slicerDIR of built from source s5

cmake_confGenL_slicerdir_slicerbuild

vs_builsr_sam

vs_build_innerbuildsam

I was able to see the Autoscoper sample data- (not interactable) swsam_sample_nocclick

When Switching to autoscoperM module- there are errors

whenAutosc_err

NicerNewerCar commented 1 year ago

@amymmorton Sorry about that I forgot to copy the UI file over from the working directory, should be all good to go now

amymmorton commented 1 year ago

After pulling again and rebuilding(deleted old build dir). Still not able to launch stillNotfoundSamplesinert autoscoper- sample data remain inert (clicking does not load the data)

NicerNewerCar commented 1 year ago

@amymmorton I haven't been able to reproduce this error yet. Could you copy your configure and build logs, as they may shed some light on whats going on.

Steps I've taken to reproduce:

amymmorton commented 1 year ago

Sorry Anthony- not certain which specific files to send along? I did not clone a new slicerAM repo- I'll try the process from there and get back to you

On Wed, May 31, 2023 at 11:25 AM Anthony Lombardi @.***> wrote:

@amymmorton https://github.com/amymmorton I haven't been able to reproduce this error yet. Could you copy your configure and build logs, as they may shed some light on whats going on.

Steps I've taken to reproduce:

  • Clone a new version of the SlicerAutoscoperM repository.
  • Open the camke gui
  • Set Slicer_DIR and Qt5_DIR to my local paths
  • Configure and Generate with the cmake gui
  • Open the solution file with Visual Studio Version 17.4.4
  • Build the ALL_BUILD project (tried both Debug and Release modes)
  • Launched Slicer from ${build-dir}/inner-build/SlicerWithSlicerAutoscoperM.exe

— Reply to this email directly, view it on GitHub https://github.com/BrownBiomechanics/SlicerAutoscoperM/pull/27#issuecomment-1570447381, or unsubscribe https://github.com/notifications/unsubscribe-auth/APUUPFVDBT5HILYZ5ASET43XI5PHDANCNFSM6AAAAAAXUOJ3VQ . You are receiving this because you were mentioned.Message ID: @.***>

--

Amy Morton, MSc

Sr. Research Engineer, Bioengineering Lab, Department of Orthopaedic Research The Warren Alpert Medical School of Brown University and Rhode Island Hospital 1 Hoppin Street, CORO West, Ste. 404, Providence, RI 02903

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CMAKE_CTEST_COMMAND:INTERNAL=C:/Program Files/CMake-3.24.3/bin/ctest.exe //ADVANCED property for variable: CMAKE_CXX_FLAGS CMAKE_CXX_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_DEBUG-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_CXX_FLAGS_MINSIZEREL CMAKE_CXX_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_CXX_FLAGS_RELEASE CMAKE_CXX_FLAGS_RELEASE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_CXX_FLAGS_RELWITHDEBINFO CMAKE_CXX_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_CXX_STANDARD_LIBRARIES CMAKE_CXX_STANDARD_LIBRARIES-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_C_FLAGS CMAKE_C_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_DEBUG-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_C_FLAGS_MINSIZEREL CMAKE_C_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_C_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_C_FLAGS_RELWITHDEBINFO CMAKE_C_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_C_STANDARD_LIBRARIES CMAKE_C_STANDARD_LIBRARIES-ADVANCED:INTERNAL=1 //Executable file format CMAKE_EXECUTABLE_FORMAT:INTERNAL=Unknown //ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS CMAKE_EXE_LINKER_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS_DEBUG CMAKE_EXE_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS_MINSIZEREL CMAKE_EXE_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS_RELEASE CMAKE_EXE_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1 //Name of external makefile project generator. CMAKE_EXTRA_GENERATOR:INTERNAL= //Name of generator. CMAKE_GENERATOR:INTERNAL=Visual Studio 17 2022 //Generator instance identifier. CMAKE_GENERATOR_INSTANCE:INTERNAL=C:/Program Files/Microsoft Visual Studio/2022/Community //Name of generator platform. CMAKE_GENERATOR_PLATFORM:INTERNAL= //Name of generator toolset. CMAKE_GENERATOR_TOOLSET:INTERNAL= //Test CMAKE_HAVE_LIBC_PTHREAD CMAKE_HAVE_LIBC_PTHREAD:INTERNAL= //Have library pthreads CMAKE_HAVE_PTHREADS_CREATE:INTERNAL= //Have library pthread CMAKE_HAVE_PTHREAD_CREATE:INTERNAL= //Source directory with the top level CMakeLists.txt file for this // project CMAKE_HOME_DIRECTORY:INTERNAL=C:/Users/amorton1/Documents/GitHub/SlicerAutoscoperM //ADVANCED property for variable: CMAKE_LINKER CMAKE_LINKER-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS CMAKE_MODULE_LINKER_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS_DEBUG CMAKE_MODULE_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_MT CMAKE_MT-ADVANCED:INTERNAL=1 //number of local generators CMAKE_NUMBER_OF_MAKEFILES:INTERNAL=1 //Platform information initialized CMAKE_PLATFORM_INFO_INITIALIZED:INTERNAL=1 //noop for ranlib CMAKE_RANLIB:INTERNAL=: //ADVANCED property for variable: CMAKE_RC_COMPILER CMAKE_RC_COMPILER-ADVANCED:INTERNAL=1 CMAKE_RC_COMPILER_WORKS:INTERNAL=1 //ADVANCED property for variable: CMAKE_RC_FLAGS CMAKE_RC_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_RC_FLAGS_DEBUG CMAKE_RC_FLAGS_DEBUG-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_RC_FLAGS_MINSIZEREL CMAKE_RC_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_RC_FLAGS_RELEASE CMAKE_RC_FLAGS_RELEASE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_RC_FLAGS_RELWITHDEBINFO CMAKE_RC_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1 //Path to CMake installation. CMAKE_ROOT:INTERNAL=C:/Program Files/CMake-3.24.3/share/cmake-3.24 //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_DEBUG CMAKE_SHARED_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_RELEASE CMAKE_SHARED_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SKIP_INSTALL_RPATH CMAKE_SKIP_INSTALL_RPATH-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SKIP_RPATH CMAKE_SKIP_RPATH-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS CMAKE_STATIC_LINKER_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_DEBUG CMAKE_STATIC_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_MINSIZEREL CMAKE_STATIC_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_RELEASE CMAKE_STATIC_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO CMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_VERBOSE_MAKEFILE CMAKE_VERBOSE_MAKEFILE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: COVERAGE_COMMAND COVERAGE_COMMAND-ADVANCED:INTERNAL=1 //ADVANCED property for variable: COVERAGE_EXTRA_FLAGS COVERAGE_EXTRA_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CTEST_SUBMIT_RETRY_COUNT CTEST_SUBMIT_RETRY_COUNT-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CTEST_SUBMIT_RETRY_DELAY CTEST_SUBMIT_RETRY_DELAY-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CURL_DIR CURL_DIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CURL_INCLUDE_DIR CURL_INCLUDE_DIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: DART_TESTING_TIMEOUT DART_TESTING_TIMEOUT-ADVANCED:INTERNAL=1 //Details about finding CURL FIND_PACKAGE_MESSAGE_DETAILS_CURL:INTERNAL=[C:/D/S5/curl-install/lib/libcurl.lib][C:/D/S5/curl-install/include][c ][v7.70.0-DEV()] //Details about finding Git FIND_PACKAGE_MESSAGE_DETAILS_Git:INTERNAL=[C:/Program Files/Git/cmd/git.exe][v()] //Details about finding OpenGL FIND_PACKAGE_MESSAGE_DETAILS_OpenGL:INTERNAL=[opengl32][cfound components: OpenGL ][v()] //Details about finding Python3 FIND_PACKAGE_MESSAGE_DETAILS_Python3:INTERNAL=[C:/D/S5/python-install/bin/PythonSlicer.exe][C:/D/S5/python-install/libs/python39.lib][C:/D/S5/python-install/include][cfound components: Interpreter Development.Module Development.Embed ][v3.9.10(3.9)] //Details about finding PythonInterp FIND_PACKAGE_MESSAGE_DETAILS_PythonInterp:INTERNAL=[C:/D/S5/python-install/bin/PythonSlicer.exe][v3.9.10()] //Details about finding PythonLibs FIND_PACKAGE_MESSAGE_DETAILS_PythonLibs:INTERNAL=[C:/D/S5/python-install/libs/python39.lib][C:/D/S5/python-install/include][v3.9.10()] //Details about finding SWIG FIND_PACKAGE_MESSAGE_DETAILS_SWIG:INTERNAL=[C:/D/S5/swigwin-4.0.2/swig.exe][C:/D/S5/swigwin-4.0.2/Lib][c ][v4.0.2()] //Details about finding Threads FIND_PACKAGE_MESSAGE_DETAILS_Threads:INTERNAL=[TRUE][v()] //ADVANCED property for variable: GITCOMMAND GITCOMMAND-ADVANCED:INTERNAL=1 //ADVANCED property for variable: GIT_EXECUTABLE GIT_EXECUTABLE-ADVANCED:INTERNAL=1 //ITKFactoryRegistration includes ITKFactoryRegistration_INCLUDE_DIRS:INTERNAL=C:/Users/amorton1/Documents/GitHub/Slicer/Libs/ITKFactoryRegistration;C:/D/S5/Slicer-build/Libs/ITKFactoryRegistration //ADVANCED property for variable: MAKECOMMAND MAKECOMMAND-ADVANCED:INTERNAL=1 //ADVANCED property for variable: MEMORYCHECK_COMMAND MEMORYCHECK_COMMAND-ADVANCED:INTERNAL=1 //ADVANCED property for variable: MEMORYCHECK_SUPPRESSIONS_FILE MEMORYCHECK_SUPPRESSIONS_FILE-ADVANCED:INTERNAL=1 //MRMLCLI includes MRMLCLI_INCLUDE_DIRS:INTERNAL=C:/Users/amorton1/Documents/GitHub/Slicer/Libs/MRML/CLI;C:/D/S5/Slicer-build/Libs/MRML/CLI //MRMLCore includes MRMLCore_INCLUDE_DIRS:INTERNAL=C:/Users/amorton1/Documents/GitHub/Slicer/Libs/MRML/Core;C:/D/S5/Slicer-build/Libs/MRML/Core;C:/D/S5/vtkAddon;C:/D/S5/Slicer-build/Libs/vtkAddon;C:/Users/amorton1/Documents/GitHub/Slicer/Libs/vtkSegmentationCore;C:/D/S5/Slicer-build/Libs/vtkSegmentationCore //MRMLLogic includes MRMLLogic_INCLUDE_DIRS:INTERNAL=C:/Users/amorton1/Documents/GitHub/Slicer/Libs/MRML/Logic;C:/D/S5/Slicer-build/Libs/MRML/Logic //ADVANCED property for variable: OPENGL_gl_LIBRARY OPENGL_gl_LIBRARY-ADVANCED:INTERNAL=1 //ADVANCED property for variable: OPENGL_glu_LIBRARY OPENGL_glu_LIBRARY-ADVANCED:INTERNAL=1 //ADVANCED property for variable: PKG_CONFIG_ARGN PKG_CONFIG_ARGN-ADVANCED:INTERNAL=1 //ADVANCED property for variable: PKG_CONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: PYTHONQT_INCLUDE_DIR PYTHONQT_INCLUDE_DIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: PYTHONQT_LIBRARY_DEBUG PYTHONQT_LIBRARY_DEBUG-ADVANCED:INTERNAL=1 //ADVANCED property for variable: PYTHONQT_LIBRARY_RELEASE PYTHONQT_LIBRARY_RELEASE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: PYTHON_DEBUG_LIBRARY PYTHON_DEBUG_LIBRARY-ADVANCED:INTERNAL=1 //ADVANCED property for variable: PYTHON_EXECUTABLE PYTHON_EXECUTABLE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: PYTHON_INCLUDE_DIR PYTHON_INCLUDE_DIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: PYTHON_LIBRARY PYTHON_LIBRARY-ADVANCED:INTERNAL=1 //RemoteIO includes RemoteIO_INCLUDE_DIRS:INTERNAL=C:/Users/amorton1/Documents/GitHub/Slicer/Libs/RemoteIO;C:/D/S5/Slicer-build/Libs/RemoteIO //ADVANCED property for variable: SITE SITE-ADVANCED:INTERNAL=1 //CXX compiler accepts flag -features=no%anachronisms SUN_COMPILER:INTERNAL=FALSE //ADVANCED property for variable: SWIG_DIR SWIG_DIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: SWIG_EXECUTABLE SWIG_EXECUTABLE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: SWIG_VERSION SWIG_VERSION-ADVANCED:INTERNAL=1 //ADVANCED property for variable: SlicerAutoscoperM_SUPERBUILD SlicerAutoscoperM_SUPERBUILD-ADVANCED:INTERNAL=1 //Slicer Module logic includes Slicer_ModuleLogic_INCLUDE_DIRS:INTERNAL=C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Cameras/Logic;C:/D/S5/Slicer-build/Modules/Loadable/Cameras/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Units/Logic;C:/D/S5/Slicer-build/Modules/Loadable/Units/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Terminologies/Logic;C:/D/S5/Slicer-build/Modules/Loadable/Terminologies/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/SubjectHierarchy/Logic;C:/D/S5/Slicer-build/Modules/Loadable/SubjectHierarchy/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Base/Logic;C:/D/S5/Slicer-build/Base/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Base/QTCore;C:/D/S5/Slicer-build/Base/QTCore;C:/Users/amorton1/Documents/GitHub/Slicer/Base/QTGUI;C:/D/S5/Slicer-build/Base/QTGUI;C:/Users/amorton1/Documents/GitHub/Slicer/Base/QTCLI;C:/D/S5/Slicer-build/Base/QTCLI;C:/Users/amorton1/Documents/GitHub/Slicer/Base/CLI;C:/D/S5/Slicer-build/Base/CLI;C:/Users/amorton1/Documents/GitHub/Slicer/Base/CLI/Testing;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Core;C:/D/S5/Slicer-build/Modules/Core;C:/Users/amorton1/Documents/GitHub/Slicer/Base/QTApp;C:/D/S5/Slicer-build/Base/QTApp;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Colors/VTKWidgets;C:/D/S5/Slicer-build/Modules/Loadable/Colors/VTKWidgets;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Colors/Logic;C:/D/S5/Slicer-build/Modules/Loadable/Colors/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Colors/MRMLDM;C:/D/S5/Slicer-build/Modules/Loadable/Colors/MRMLDM;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Annotations/Logic;C:/D/S5/Slicer-build/Modules/Loadable/Annotations/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/SceneViews/Logic;C:/D/S5/Slicer-build/Modules/Loadable/SceneViews/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Markups/VTKWidgets;C:/D/S5/Slicer-build/Modules/Loadable/Markups/VTKWidgets;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Markups/Logic;C:/D/S5/Slicer-build/Modules/Loadable/Markups/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Markups/MRMLDM;C:/D/S5/Slicer-build/Modules/Loadable/Markups/MRMLDM;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Transforms/Logic;C:/D/S5/Slicer-build/Modules/Loadable/Transforms/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Transforms/MRMLDM;C:/D/S5/Slicer-build/Modules/Loadable/Transforms/MRMLDM;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Data/Logic;C:/D/S5/Slicer-build/Modules/Loadable/Data/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Models/Logic;C:/D/S5/Slicer-build/Modules/Loadable/Models/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Plots/Logic;C:/D/S5/Slicer-build/Modules/Loadable/Plots/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Segmentations/Logic;C:/D/S5/Slicer-build/Modules/Loadable/Segmentations/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Segmentations/MRMLDM;C:/D/S5/Slicer-build/Modules/Loadable/Segmentations/MRMLDM;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Sequences/Logic;C:/D/S5/Slicer-build/Modules/Loadable/Sequences/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Tables/Logic;C:/D/S5/Slicer-build/Modules/Loadable/Tables/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Texts/Logic;C:/D/S5/Slicer-build/Modules/Loadable/Texts/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Reformat/Logic;C:/D/S5/Slicer-build/Modules/Loadable/Reformat/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/ViewControllers/Logic;C:/D/S5/Slicer-build/Modules/Loadable/ViewControllers/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Volumes/Logic;C:/D/S5/Slicer-build/Modules/Loadable/Volumes/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/VolumeRendering/Logic;C:/D/S5/Slicer-build/Modules/Loadable/VolumeRendering/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/VolumeRendering/MRMLDM;C:/D/S5/Slicer-build/Modules/Loadable/VolumeRendering/MRMLDM;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/CropVolume/Logic;C:/D/S5/Slicer-build/Modules/Loadable/CropVolume/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Scripted/DICOMLib/Logic;C:/D/S5/Slicer-build/Modules/Scripted/DICOMLib/Logic;C:/Users/amorton1/Documents/GitHub/Slicer/Utilities/Templates/Modules/LoadableCustomMarkups/VTKWidgets;C:/D/S5/Slicer-build/Utilities/Templates/Modules/LoadableCustomMarkups/VTKWidgets;C:/Users/amorton1/Documents/GitHub/Slicer/Utilities/Templates/Modules/LoadableCustomMarkups/Logic;C:/D/S5/Slicer-build/Utilities/Templates/Modules/LoadableCustomMarkups/Logic;C:/D/S5/MultiVolumeExplorer/Logic;C:/D/S5/Slicer-build/E/MultiVolumeExplorer/Logic;C:/D/S5/SurfaceToolbox/DynamicModeler/Logic;C:/D/S5/Slicer-build/E/SurfaceToolbox/DynamicModeler/Logic //Slicer Module MRML includes Slicer_ModuleMRML_INCLUDE_DIRS:INTERNAL=C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Colors/MRML;C:/D/S5/Slicer-build/Modules/Loadable/Colors/MRML;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Annotations/MRML;C:/D/S5/Slicer-build/Modules/Loadable/Annotations/MRML;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Markups/MRML;C:/D/S5/Slicer-build/Modules/Loadable/Markups/MRML;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Segmentations/MRML;C:/D/S5/Slicer-build/Modules/Loadable/Segmentations/MRML;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Sequences/MRML;C:/D/S5/Slicer-build/Modules/Loadable/Sequences/MRML;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/VolumeRendering/MRML;C:/D/S5/Slicer-build/Modules/Loadable/VolumeRendering/MRML;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/CropVolume/MRML;C:/D/S5/Slicer-build/Modules/Loadable/CropVolume/MRML;C:/Users/amorton1/Documents/GitHub/Slicer/Utilities/Templates/Modules/LoadableCustomMarkups/MRML;C:/D/S5/Slicer-build/Utilities/Templates/Modules/LoadableCustomMarkups/MRML;C:/D/S5/MultiVolumeExplorer/MRML;C:/D/S5/Slicer-build/E/MultiVolumeExplorer/MRML;C:/D/S5/SurfaceToolbox/DynamicModeler/MRML;C:/D/S5/Slicer-build/E/SurfaceToolbox/DynamicModeler/MRML //Slicer Module widgets includes Slicer_ModuleWidgets_INCLUDE_DIRS:INTERNAL=C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Units/Widgets;C:/D/S5/Slicer-build/Modules/Loadable/Units/Widgets;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Terminologies/Widgets;C:/D/S5/Slicer-build/Modules/Loadable/Terminologies/Widgets;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/SubjectHierarchy/Widgets;C:/D/S5/Slicer-build/Modules/Loadable/SubjectHierarchy/Widgets;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Colors/Widgets;C:/D/S5/Slicer-build/Modules/Loadable/Colors/Widgets;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Markups/Widgets;C:/D/S5/Slicer-build/Modules/Loadable/Markups/Widgets;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Transforms/Widgets;C:/D/S5/Slicer-build/Modules/Loadable/Transforms/Widgets;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Models/Widgets;C:/D/S5/Slicer-build/Modules/Loadable/Models/Widgets;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Plots/Widgets;C:/D/S5/Slicer-build/Modules/Loadable/Plots/Widgets;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Segmentations/Widgets;C:/D/S5/Slicer-build/Modules/Loadable/Segmentations/Widgets;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Sequences/Widgets;C:/D/S5/Slicer-build/Modules/Loadable/Sequences/Widgets;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Tables/Widgets;C:/D/S5/Slicer-build/Modules/Loadable/Tables/Widgets;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Texts/Widgets;C:/D/S5/Slicer-build/Modules/Loadable/Texts/Widgets;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/Volumes/Widgets;C:/D/S5/Slicer-build/Modules/Loadable/Volumes/Widgets;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Loadable/VolumeRendering/Widgets;C:/D/S5/Slicer-build/Modules/Loadable/VolumeRendering/Widgets;C:/Users/amorton1/Documents/GitHub/Slicer/Modules/Scripted/DICOMLib/Widgets;C:/D/S5/Slicer-build/Modules/Scripted/DICOMLib/Widgets;C:/Users/amorton1/Documents/GitHub/Slicer/Utilities/Templates/Modules/LoadableCustomMarkups/Widgets;C:/D/S5/Slicer-build/Utilities/Templates/Modules/LoadableCustomMarkups/Widgets //Number of processors available to run parallel tests. VTK_MPI_NUMPROCS:INTERNAL=2 _Python3_DEVELOPMENT_EMBED_SIGNATURE:INTERNAL=cfd23bb71f0180b4d484dd916f879ef9 _Python3_DEVELOPMENT_MODULE_SIGNATURE:INTERNAL=cfd23bb71f0180b4d484dd916f879ef9 _Python3_EXECUTABLE:INTERNAL=C:/D/S5/python-install/bin/PythonSlicer.exe _Python3_INCLUDE_DIR:INTERNAL=C:/D/S5/python-install/include //Python3 Properties _Python3_INTERPRETER_PROPERTIES:INTERNAL=Python;3;9;10;64;;cp39-win_amd64;C:\D\S5\python-install\Lib;C:\D\S5\python-install\Lib;C:\D\S5\python-install\Lib\site-packages;C:\D\S5\python-install\Lib\site-packages _Python3_INTERPRETER_SIGNATURE:INTERNAL=d25b8fce4e238d425a946996ad18cfdd //Path to a library. _Python3_LIBRARY_DEBUG:INTERNAL=_Python3_LIBRARY_DEBUG-NOTFOUND _Python3_LIBRARY_RELEASE:INTERNAL=C:/D/S5/python-install/libs/python39.lib //Path to a library. _Python3_RUNTIME_LIBRARY_RELEASE:INTERNAL=C:/D/S5/python-install/bin/python39.dll //qMRMLWidgets includes qMRMLWidgets_INCLUDE_DIRS:INTERNAL=C:/Users/amorton1/Documents/GitHub/Slicer/Libs/MRML/Widgets;C:/D/S5/Slicer-build/Libs/MRML/Widgets //vtkAddon includes vtkAddon_INCLUDE_DIRS:INTERNAL=C:/D/S5/vtkAddon;C:/D/S5/Slicer-build/Libs/vtkAddon //vtkITK includes vtkITK_INCLUDE_DIRS:INTERNAL=C:/Users/amorton1/Documents/GitHub/Slicer/Libs/vtkITK;C:/D/S5/Slicer-build/Libs/vtkITK //vtkSegmentationCore includes vtkSegmentationCore_INCLUDE_DIRS:INTERNAL=C:/Users/amorton1/Documents/GitHub/Slicer/Libs/vtkSegmentationCore;C:/D/S5/Slicer-build/Libs/vtkSegmentationCore //vtkTeem includes vtkTeem_INCLUDE_DIRS:INTERNAL=C:/Users/amorton1/Documents/GitHub/Slicer/Libs/vtkTeem;C:/D/S5/Slicer-build/Libs/vtkTeem

This is the CMakeCache file.

For build in directory: c:/S/sampleD/inner-build

It was generated by CMake: C:/Program Files/CMake-3.24.3/bin/cmake.exe

You can edit this file to change values found and used by cmake.

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If you do want to change a value, simply edit, save, and exit the editor.

The syntax for the file is as follows:

KEY:TYPE=VALUE

KEY is the name of a variable in the cache.

TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!.

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EXTERNAL cache entries

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//Path to a file. SWIG_DIR:PATH=C:/D/S5/swigwin-4.0.2/Lib

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//List of external projects to install SlicerAutoscoperM_CPACK_INSTALL_CMAKE_PROJECTS:STRING=C:/S/sampleD/Autoscoper-build/Autoscoper-build;Autoscoper;ALL;/

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//Path to project build directory or file Teem_DIR:STRING=C:/D/S5/teem-build

//Path to project build directory or file VTK_DIR:STRING=C:/D/S5/VTK-build

//Path to project build directory or file ZLIB_INCLUDE_DIR:STRING=C:/D/S5/zlib-install/include

//Path to project build directory or file ZLIB_LIBRARY:STRING=C:/D/S5/zlib-install/lib/zlib.lib

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//Initial cache inner_USE_SYSTEM_Autoscoper:BOOL=

//Initial cache inner_USE_SYSTEM_inner:BOOL=

//Path to project build directory or file qRestAPI_DIR:STRING=C:/D/S5/qRestAPI-build

//Path to project build directory or file sqlite_DIR:STRING=C:/D/S5/sqlite-build

//Path to project build directory or file sqlite_INCLUDE_DIR:STRING=C:/D/S5/sqlite-install/include/sqlite3

//Path to project build directory or file sqlite_LIBRARY:STRING=C:/D/S5/sqlite-install/lib/sqlite3.lib

########################

INTERNAL cache entries

########################

//ADVANCED property for variable: CMAKE_AR CMAKE_AR-ADVANCED:INTERNAL=1 //This is the directory where this CMakeCache.txt was created CMAKE_CACHEFILE_DIR:INTERNAL=c:/S/sampleD/inner-build //Major version of cmake used to create the current loaded cache CMAKE_CACHE_MAJOR_VERSION:INTERNAL=3 //Minor version of cmake used to create the current loaded cache CMAKE_CACHE_MINOR_VERSION:INTERNAL=24 //Patch version of cmake used to create the current loaded cache CMAKE_CACHE_PATCH_VERSION:INTERNAL=3 //Path to CMake executable. CMAKE_COMMAND:INTERNAL=C:/Program Files/CMake-3.24.3/bin/cmake.exe //Path to cpack program executable. CMAKE_CPACK_COMMAND:INTERNAL=C:/Program Files/CMake-3.24.3/bin/cpack.exe //ADVANCED property for variable: CMAKE_CTEST_COMMAND CMAKE_CTEST_COMMAND-ADVANCED:INTERNAL=1 //Path to ctest program executable. CMAKE_CTEST_COMMAND:INTERNAL=C:/Program Files/CMake-3.24.3/bin/ctest.exe //ADVANCED property for variable: CMAKE_CXX_FLAGS CMAKE_CXX_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_DEBUG-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_CXX_FLAGS_MINSIZEREL CMAKE_CXX_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_CXX_FLAGS_RELEASE CMAKE_CXX_FLAGS_RELEASE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_CXX_FLAGS_RELWITHDEBINFO CMAKE_CXX_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_CXX_STANDARD_LIBRARIES CMAKE_CXX_STANDARD_LIBRARIES-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_C_FLAGS CMAKE_C_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_DEBUG-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_C_FLAGS_MINSIZEREL CMAKE_C_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_C_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_C_FLAGS_RELWITHDEBINFO CMAKE_C_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_C_STANDARD_LIBRARIES CMAKE_C_STANDARD_LIBRARIES-ADVANCED:INTERNAL=1 //Executable file format C

amymmorton commented 1 year ago

The newly cloned repo build was not successful [image: image.png]

On Fri, Jun 2, 2023 at 11:21 AM Morton, Amy @.***> wrote:

Sorry Anthony- not certain which specific files to send along? I did not clone a new slicerAM repo- I'll try the process from there and get back to you

On Wed, May 31, 2023 at 11:25 AM Anthony Lombardi < @.***> wrote:

@amymmorton https://github.com/amymmorton I haven't been able to reproduce this error yet. Could you copy your configure and build logs, as they may shed some light on whats going on.

Steps I've taken to reproduce:

  • Clone a new version of the SlicerAutoscoperM repository.
  • Open the camke gui
  • Set Slicer_DIR and Qt5_DIR to my local paths
  • Configure and Generate with the cmake gui
  • Open the solution file with Visual Studio Version 17.4.4
  • Build the ALL_BUILD project (tried both Debug and Release modes)
  • Launched Slicer from ${build-dir}/inner-build/SlicerWithSlicerAutoscoperM.exe

— Reply to this email directly, view it on GitHub https://github.com/BrownBiomechanics/SlicerAutoscoperM/pull/27#issuecomment-1570447381, or unsubscribe https://github.com/notifications/unsubscribe-auth/APUUPFVDBT5HILYZ5ASET43XI5PHDANCNFSM6AAAAAAXUOJ3VQ . You are receiving this because you were mentioned.Message ID: @.***>

--

Amy Morton, MSc

Sr. Research Engineer, Bioengineering Lab, Department of Orthopaedic Research The Warren Alpert Medical School of Brown University and Rhode Island Hospital 1 Hoppin Street, CORO West, Ste. 404, Providence, RI 02903

--

Amy Morton, MSc

Sr. Research Engineer, Bioengineering Lab, Department of Orthopaedic Research The Warren Alpert Medical School of Brown University and Rhode Island Hospital 1 Hoppin Street, CORO West, Ste. 404, Providence, RI 02903

NicerNewerCar commented 1 year ago

The issue above should be fixed once #29 is merged

NicerNewerCar commented 1 year ago

@amymmorton This branch is now updated with the changes from #29

jcfr commented 1 year ago

The sample data log widget is also updated: