Tracking evaluation module

[NicerNewerCar]

• Adds new Tracking Evaluation Module
• Closes #32 and Closes #30

TODO:

• [x] Support loading partial volumes, tracking data, and GT tracking data into Slicer.
• [x] Visualize the movement of the partial volumes.
• [x] Fix issue with transforms
• [x] Visualize the difference between the tracking data and GT data (see diagram above).
  • [x] Models should be green iff the difference is within some tolerance (ie. 1mm or 2 deg).
  • [x] Models should be red otherwise
• [x] Update the current frame to be a spin box
• [x] Add reverse option for playing sequence
• [x] Add pause button
• [x] Update the tutorial or create a new one to cover the usage of this module.
• [x] Update the Sample data to include GT tracking data (Update the Ankle filter for #30 too).
  • [x] Need to update the release in autoscoper main.
  • [x] Need to update checksum verification in SA^M: https://github.com/BrownBiomechanics/SlicerAutoscoperM/blob/13ae181309b949420dc06c1bac2f894d63f3a3f9/AutoscoperM/AutoscoperM.py#L104-L116

[NicerNewerCar]

@amymmorton You are good to start testing this branch.

An updated tutorial on how to use the module can be found here.

Note: Only the Wrist and Ankle datasets have been updated. Still waiting on the knee.

[amymmorton]

inner failed to compile 2x.. trying from fresh clone .. will update

[amymmorton]

Still unable to successfully build inner

[NicerNewerCar]

@amymmorton If you could upload the build log (from the output tab of visual studio) that would be much appreciated.

[amymmorton]

great, after refreshing the branch we built

Instructions don't really make sense.. how do we load tra files for each rigid body?

[NicerNewerCar]

I was trying to make things simpler, but you should export all of the ridge bodies into one tra file.

[amymmorton]

got it..

[NicerNewerCar]

@amymmorton Added the option to view the relative coordinates. All you need to do is select the model which you want to use as the reference. Then you can move the timeline scrubber to see the table get updated automatically.

[jcfr]

Topic has been re-based along with integrating the following changes:

• renamed variable
  • like gtVarName to grountTruthVarName
  • like seqSomething to sequenceSometing
  • colNames -> columnNames
  • fName -> fileName
• renamed method
  • updateColor -> setColor
  • updateGtVisibility -> setGroundTruthVisible
• fixed typos reported by the newly integrated codespell pre-commit check
• re-ordered imports
• removed unused parameter node member like inputVolume, imageThreshold, ...
• removed obsolete setting of inputVolume in initializeParameterNode()
• removed -> None (having them included them in the Slicer module template is an oversight)
• fixed sampleDataType to use the updated folder names prefixed with 2023-08-01
• removed unneeded update of sys.path in data/__init__.py
• update annotation to use list instead of List
• prefer f-string formatting

[jcfr]

Considering that I am able to load the .tra file exported selecting All and compare it against the relevant "ground truth" data set, I am moving forward with the integration.

Additional improvements will be integrated in follow-up pull request.