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BrownDwarf / xveganx

Spectroscopic and photometric analysis of heavily spotted WTTS
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Run Starfish grid and PCA jobs and other pre-processing #9

Closed gully closed 6 years ago

gully commented 7 years ago

Need to do it

gully commented 7 years ago 
obsidian at dust in ~/GitHub/xveganx/sf/Anon1/m112 on master [!?]
$ $Starfish/scripts/grid.py --create
New in v0.3: Using explicit air/vacuum state from Instrument class.
FFT grid stretches from 15915.000000000011 to 16134.999999999995
wl_FFT dv is 0.2512227223667381 km/s
Total of 114 files to process.

obsidian at dust in ~/GitHub/xveganx/sf/Anon1/m112 on master [!?]
$ $Starfish/scripts/pca.py --create
found 16 components explaining 99.9% of the variance
Shape of PCA components (16, 4096)

obsidian at dust in ~/GitHub/xveganx/sf/Anon1/m112 on master [!?]
$ time $Starfish/scripts/pca.py --optimize=emcee --samples=2
Burned in

real    6m11.563s
user    42m26.020s
sys 2m9.728s
(Starfish)
obsidian at dust in ~/GitHub/xveganx/sf/Anon1/m112 on master [!?]
$ time $Starfish/scripts/pca.py --optimize=emcee --samples=2 --resume
Burned in

real    7m24.401s
user    50m29.487s
sys 1m4.424s
gully commented 6 years ago

It took about 10 minutes to run PCA.py with 3 emcee optimization samples on m=104