search

BruneauLab-GladstoneInstitutes / computing-envs

Docker and Singularity files for single cell analysis
0 stars 0 forks source link

firecloud==0.16.25 install fails, cannot import of "six" #4

Open h836472 opened 2 years ago

h836472 commented 2 years ago

Dear Developers,

Moving along with monocle3 installation from docker, another bug popped up. installation of firecloud fails with the following error:

Collecting firecloud==0.16.25 Downloading firecloud-0.16.25.tar.gz (48 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 49.0/49.0 KB 3.4 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'error' error: subprocess-exited-with-error

× python setup.py egg_info did not run successfully. │ exit code: 1 ╰─> [6 lines of output] Traceback (most recent call last): File "", line 36, in File "", line 34, in File "/tmp/pip-install-6r1n536u/firecloud_6f8c782be17149f7b85c877bbf35a961/setup.py", line 9, in from setuptools.command.easy_install import six, rmtree_safe, rmtree, log ImportError: cannot import name 'six' from 'setuptools.command.easy_install' (/usr/local/lib/python3.7/dist-packages/setuptools/command/easy_install.py) [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. error: metadata-generation-failed

× Encountered error while generating package metadata. ╰─> See above for output.

h836472 commented 2 years ago

changing && pip3 install --ignore-installed firecloud==0.16.25 to && pip3 install --ignore-installed firecloud

probably resolves this issue (and hopefully does not create another one)