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Buttonwood / Bioinformatics

Useful scripts for NGS analysis
MIT License
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Genome Assembly #9

Open Buttonwood opened 10 years ago

Buttonwood commented 10 years ago

Velvet

velveth ASS 63,93,2 -shortPaired -fastq -separate read1.fq read2.fq -long -fasta long.fa
velvet99/velvetg ASS_63 >&ASS_63.log;
Buttonwood commented 10 years ago

MSRCA

masurca -g sr_config_example.txt
masurca sr_config_example.txt
nohup  assemble.sh &
Buttonwood commented 10 years ago

KAnalyze: a fast versatile pipelined K-mer toolkit http://bioinformatics.oxfordjournals.org/content/30/14/2070.short?rss=1