Large barcode files slow demux.py down

BuysDB / SingleCellMultiOmics

Tools which deal with multiple single cell measurements

MIT License

19 stars 9 forks source link

Closed BuysDB closed 3 years ago

BuysDB commented 3 years ago

Currently all barcodes are loaded upon startup, this is a problem when the files are very large. Required changes:

[ ] Modify the barcode file parser such that it stores a promise of the loading of the barcodes, but does not load them yet
[ ] Cache the barcode statistics so that they can still be shown