This PR address one of the reviewer comments for the JOSS manuscript related to the way different plot types are selected in the interactive report. This PR re-does the back end of our interactive report to allow users to select the plot type and p-value type from a dropdown menu, instead of using tabs. In changing the way the back-end works, this PR also significantly reduces the file size of the HTML output and makes the report a little speedier to interact with.
The reviewer suggested adding boxplots to the right-hand plot (of normalized intensity for each sample by group). We have chosen not to add boxplots, as we're already plotting the raw data. However, we did add lines at the per-group mean, so it is easier to visually compare differential abundance across groups.
This PR address one of the reviewer comments for the JOSS manuscript related to the way different plot types are selected in the interactive report. This PR re-does the back end of our interactive report to allow users to select the plot type and p-value type from a dropdown menu, instead of using tabs. In changing the way the back-end works, this PR also significantly reduces the file size of the HTML output and makes the report a little speedier to interact with.
The reviewer suggested adding boxplots to the right-hand plot (of normalized intensity for each sample by group). We have chosen not to add boxplots, as we're already plotting the raw data. However, we did add lines at the per-group mean, so it is easier to visually compare differential abundance across groups.
This PR closes #95.