Closed hgscott closed 7 months ago
I used my test_growth_w_0_C
test, and got the fluxes for all reactions with a non-zero flux in the solution.
ID | Flux |
---|---|
rxn00836_c0 | -0.002770596745527444 |
rxn00423_c0 | 0.023057242746862952 |
rxn00364_c0 | 0.16006877570670683 |
rxn03408_c0 | 0.009257971529604133 |
rxn04070_c0 | 0.00046176612425031686 |
rxn00199_c0 | 0.351224015432561 |
rxn01219_c0 | -1.181103947621427e-14 |
rxn00800_c0 | 0.05837011106852836 |
rxn01705_c0 | -0.0018140527307267318 |
rxn00179_c0 | 0.06963954833281986 |
rxn01218_c0 | 1.1811105595509738e-14 |
rxn02320_c0 | -0.02207843116066436 |
rxn02504_c0 | 0.001385298372763764 |
rxn00898_c0 | 0.2035985688582041 |
rxn05334_c0 | 0.10355537532764489 |
rxn05040_c0 | 0.0018470644970097509 |
rxn02988_c0 | -0.0009235322485021676 |
rxn01117_c0 | -0.018515943059208263 |
rxn01331_c0 | 0.0004617661242503167 |
rxn00710_c0 | 0.04957297726805517 |
rxn02305_c0 | 0.000461766124250317 |
rxn03181_c0 | 0.009257971529604135 |
rxn02331_c0 | -0.018515943059208267 |
rxn00337_c0 | 0.12528703252584075 |
rxn05346_c0 | 0.10355537532764485 |
rxn00416_c0 | 0.05594029468235762 |
rxn02376_c0 | 0.0961533889220579 |
rxn12512_c0 | 0.0009235322485093308 |
rxn00902_c0 | -0.10456245768786578 |
rxn06672_c0 | 0.7266053157955137 |
rxn00649_c0 | 0.023057242746862952 |
rxn01739_c0 | 0.09303452107382608 |
rxn01974_c0 | 0.08876513093401922 |
rxn08971_c0 | 24.304198230714913 |
rxn00060_c0 | 0.0009235322485048363 |
rxn00225_c0 | 17.670086948325526 |
rxn05350_c0 | 0.10355537532764486 |
rxn05064_c0 | 8.430885443645283e-19 |
rxn00148_c0 | -11.787395880004892 |
rxn00100_c0 | 0.0009235322485050847 |
rxn00789_c0 | -0.02207843116066436 |
rxn03436_c0 | 0.06735161865303811 |
rxn00781_c0 | -0.6508127494452326 |
rxn02264_c0 | 0.0009235322485048363 |
rxn09202_c0 | 0.007158189709953029 |
rxn00097_c0 | 0.44907140639956766 |
rxn05514_c0 | -0.0004617661242515749 |
rxn02212_c0 | 0.09303452107382608 |
rxn05324_c0 | -0.1035553753276449 |
rxn10481_c0 | 0.0004617661242503138 |
rxn00692_c0 | -0.21144617552964204 |
rxn00802_c0 | 0.06963954833281986 |
rxn02160_c0 | 0.022078431160664356 |
rxn03958_c0 | -0.11292007380768643 |
rxn01362_c0 | -0.04957297726805517 |
rxn05329_c0 | 0.10355537532764485 |
rxn03174_c0 | -0.0013852983727637646 |
rxn00549_c0 | 0.18834156496933918 |
rxn00727_c0 | 0.013147829792305768 |
rxn01354_c0 | -0.0013522866064764136 |
rxn01445_c0 | 0.0004617661242503182 |
rxn08766_c0 | 0.10355537532764485 |
rxn02159_c0 | 0.022078431160664356 |
rxn05466_c0 | 2.3066699767773606 |
rxn00917_c0 | 0.039685981240750054 |
rxn00300_c0 | 0.0009235322485048751 |
rxn08792_c0 | 9.747754306539358 |
rxn05335_c0 | 0.057265517679624234 |
rxn03419_c0 | 0.0013852983727637642 |
rxn00272_c0 | 0.13823879242606715 |
rxn05595_c0 | 0.0009235322485031498 |
rxn05348_c0 | 0.10355537532764489 |
rxn11946_c0 | 0.0004617661242546346 |
rxn00907_c0 | 0.1694160922130541 |
rxn05458_c0 | 0.057265517679624234 |
rxn02404_c0 | 0.018515943059208267 |
rxn08822_c0 | -0.028632758839812117 |
rxn05030_c0 | 0.009257971529604132 |
rxn05345_c0 | 0.09429740379804077 |
rxn00336_c0 | 13.640755776241132 |
rxn01465_c0 | -0.04957297726805518 |
rxn01872_c0 | -0.0961533889220579 |
rxn01301_c0 | -0.03606013546756996 |
rxn01643_c0 | -0.12528703252584075 |
rxn00248_c0 | 27.43463991316315 |
rxn00499_c0 | -9.747754306539262 |
rxn00707_c0 | 0.0018140527307267315 |
rxn01269_c0 | 0.03407555738571135 |
rxn00392_c0 | 0.0004617661242546062 |
rxn00747_c0 | 0.23937242518751256 |
rxn00029_c0 | 0.0036941289940193448 |
rxn06673_c0 | 0.7266053157955137 |
rxn09128_c0 | -0.02863275883981212 |
rxn05256_c0 | 0.05911737821442983 |
rxn02175_c0 | 0.0009235322485050846 |
rxn02835_c0 | 0.022078431160664356 |
rxn02774_c0 | 0.000461766124251575 |
rxn00555_c0 | 0.03703188611841653 |
rxn03435_c0 | -0.06735161865303811 |
rxn03080_c0 | 0.0018470644970097507 |
rxn00849_c0 | 0.009257971529604135 |
rxn00737_c0 | 0.06735161865303811 |
rxn01256_c0 | 0.07711609453599538 |
rxn00777_c0 | -0.1309466712947046 |
rxn01740_c0 | -0.09303452107382608 |
rxn05327_c0 | -0.10355537532764489 |
rxn00251_c0 | 12.952855734029388 |
rxn00790_c0 | -0.07366883052734588 |
rxn03910_c0 | 0.11292007380768641 |
rxn00237_c0 | 0.09670380570280328 |
rxn00422_c0 | -0.007158189709953032 |
rxn08311_c0 | 0.02863275883981212 |
rxn03175_c0 | 0.022078431160664356 |
rxn03421_c0 | 0.0013852983727637642 |
rxn05336_c0 | -0.05726551767962424 |
rxn09210_c0 | 0.00715818970995303 |
rxn00182_c0 | -20.354450227685195 |
rxn01045_c0 | -0.3992784020935801 |
rxn00126_c0 | 0.0032323628697700675 |
rxn01015_c0 | -0.007158189709953032 |
rxn05340_c0 | -0.1035553753276449 |
rxn00405_c0 | 0.000923532248504836 |
rxn00904_c0 | 0.301165823171751 |
rxn03159_c0 | 0.009257971529604133 |
rxn01000_c0 | 0.04304053715028404 |
rxn01281_c0 | 0.007158189709953032 |
rxn00786_c0 | -0.18834156496933918 |
rxn03908_c0 | 0.11292007380768644 |
rxn01100_c0 | 0.6508127494452326 |
rxn00838_c0 | 0.05837011106852836 |
rxn00102_c0 | -0.9190249057994843 |
rxn01352_c0 | -0.00046176612425031816 |
rxn01255_c0 | 0.09303452107382608 |
rxn05296_c0 | 0.15704457250847828 |
rxn01211_c0 | 0.09574726168570818 |
rxn00527_c0 | -0.03407555738571136 |
rxn05322_c0 | -0.10355537532764485 |
rxn00966_c0 | -0.00046176612425196913 |
rxn01509_c0 | -0.00046176612425031816 |
rxn02011_c0 | 0.009257971529604133 |
rxn00173_c0 | -17.670086948325526 |
rxn08528_c0 | 0.0009235322485004913 |
rxn01145_c0 | 1.181620209884023e-14 |
rxn09176_c0 | -0.8381695967628217 |
rxn01669_c0 | -0.0009235322485020195 |
rxn08352_c0 | 0.010643269902359252 |
rxn09106_c0 | 0.021474569129859088 |
rxn00772_c0 | 0.0027705967455274446 |
rxn05338_c0 | -0.10355537532764489 |
rxn03135_c0 | -0.02207843116066436 |
rxn05337_c0 | -0.10355537532764485 |
rxn03147_c0 | 0.07320706440309555 |
rxn03843_c0 | 0.009257971529604132 |
rxn01116_c0 | -0.15130967885092267 |
rxn02811_c0 | -0.10456245768786579 |
rxn03062_c0 | 0.10456245768786578 |
rxn00863_c0 | 0.022078431160664356 |
rxn09113_c0 | 0.021474569129859088 |
rxn02402_c0 | -0.0009235322485019789 |
rxn05465_c0 | 0.6693397981158894 |
rxn01303_c0 | 0.03606013546756997 |
rxn00137_c0 | 0.00046176612425465443 |
rxn06023_c0 | 0.00046176612425157486 |
rxn00611_c0 | -0.05010732796967121 |
rxn02286_c0 | 0.009257971529604133 |
rxn00832_c0 | -0.09528549556375993 |
rxn01106_c0 | 0.9484505579508284 |
rxn00931_c0 | -0.05135095786806216 |
rxn00066_c0 | 0.002770596745516178 |
rxn05115_c0 | 0.07320706440309555 |
rxn01573_c0 | -0.06735161865303811 |
rxn00650_c0 | -0.000461766124254652 |
rxn03167_c0 | 0.0013852983727637644 |
rxn00515_c0 | 0.0018140527307267315 |
rxn03005_c0 | -0.0736688305273459 |
rxn03437_c0 | 0.06735161865303811 |
rxn04139_c0 | 0.00046176612425462385 |
rxn06723_c0 | -0.01851594305920827 |
rxn00313_c0 | 0.07950715940441506 |
rxn00804_c0 | -0.10456245768786579 |
rxn05325_c0 | -0.10355537532764487 |
rxn02895_c0 | 0.0736688305273459 |
rxn00189_c0 | 18.567212253859708 |
rxn02508_c0 | 0.013147829792305764 |
rxn00420_c0 | 0.2976378085055958 |
rxn14334_c0 | 0.009257971529604132 |
rxn05005_c0 | 0.0004617661242502693 |
rxn02939_c0 | 0.0004617661242503167 |
rxn00048_c0 | 0.000923532248504875 |
rxn00853_c0 | 0.0009235322485018442 |
rxn05231_c0 | 0.0018140527307385483 |
rxn00283_c0 | 0.027773914588812402 |
rxn00379_c0 | 0.059117378214432914 |
rxn05330_c0 | 0.10355537532764485 |
rxn02475_c0 | 0.000923532248504875 |
rxn05339_c0 | -0.10355537532764485 |
rxn03108_c0 | 0.000461766124250317 |
rxn01018_c0 | 0.049572977268055186 |
rxn03146_c0 | 0.01851594305920827 |
rxn03893_c0 | 0.0004617661242546276 |
rxn02789_c0 | 0.10456245768786578 |
rxn00410_c0 | 0.023902933406983674 |
rxn01333_c0 | -0.028906695826423134 |
rxn12510_c0 | 0.0009235322485093309 |
rxn05342_c0 | -0.09429740379804077 |
rxn00414_c0 | 0.11921252560087504 |
rxn00799_c0 | -13.930737630975322 |
rxn02405_c0 | 0.018515943059208267 |
rxn00011_c0 | -0.20359856885820407 |
rxn02200_c0 | 0.001385298372763764 |
rxn00791_c0 | -0.013147829792305766 |
rxn00105_c0 | 0.0009235322484989685 |
rxn05029_c0 | 0.00046176612425026926 |
rxn02285_c0 | -0.009257971529604132 |
rxn02303_c0 | 0.00046176612425458314 |
rxn05315_c0 | -0.0004617661242515749 |
rxn05294_c0 | 0.0035112669545299237 |
rxn03907_c0 | 0.11292007380768644 |
rxn02834_c0 | 0.022078431160664356 |
rxn00459_c0 | -0.9484505579508283 |
rxn00770_c0 | 0.16262396386665517 |
rxn14040_c0 | 0.009257971529604132 |
rxn05209_c0 | -0.5722605517495352 |
rxn05618_c0 | 0.0004617661242515749 |
rxn00260_c0 | -0.48980438746006644 |
rxn00461_c0 | 0.009257971529604135 |
rxn03136_c0 | 0.07320706440309556 |
rxn01387_c0 | 0.351224015432561 |
rxn02937_c0 | 0.07366883052734587 |
rxn00350_c0 | -0.00046176612425458135 |
rxn03137_c0 | 0.09528549556375993 |
rxn00952_c0 | 0.03606013546756997 |
rxn01517_c0 | -0.0018140527307385526 |
rxn00371_c0 | 0.005079427366779023 |
rxn05006_c0 | 0.00046176612425157497 |
rxn09234_c0 | 0.0018140527307385545 |
rxn01299_c0 | 0.002770596745527444 |
rxn05331_c0 | 0.10355537532764489 |
rxn02476_c0 | 0.09303452107382608 |
rxn01512_c0 | 0.0018140527307267318 |
rxn03841_c0 | 0.001385298372763764 |
rxn04954_c0 | -0.03929249833734005 |
rxn06865_c0 | -0.009257971529604133 |
rxn04113_c0 | 0.10227680390532716 |
rxn01257_c0 | 0.0013852983727637642 |
rxn09272_c0 | 13.730444439423652 |
rxn00943_c0 | 0.05726551767962423 |
rxn02213_c0 | 0.09303452107382608 |
rxn01127_c0 | -1.181656931606497e-14 |
rxn05341_c0 | -0.10355537532764487 |
rxn03393_c0 | 0.00046176612425462754 |
rxn00834_c0 | 0.039685981240750054 |
rxn05313_c0 | 0.19075351725153805 |
rxn01332_c0 | 0.09303452107382607 |
rxn00785_c0 | 0.12240298302449952 |
rxn00693_c0 | 0.03883073221308847 |
rxn03909_c0 | 0.11384360605618705 |
rxn01101_c0 | 0.29763780850559585 |
rxn03084_c0 | 0.07366883052734588 |
rxn03439_c0 | 0.009257971529604132 |
rxn05328_c0 | -0.05726551767962424 |
rxn05323_c0 | -0.057265517679624234 |
rxn01507_c0 | 1.1816569316064972e-14 |
rxn01790_c0 | -0.0009235322485093308 |
rxn05651_c0 | 0.05957914433868449 |
rxn00077_c0 | 0.0004617661242474199 |
rxn01388_c0 | -13.991979791673693 |
rxn03638_c0 | 0.03703188611841653 |
rxn02056_c0 | -0.00046176612425157497 |
rxn01068_c0 | -0.12614474432806574 |
rxn00851_c0 | 0.009257971529604133 |
rxn00141_c0 | 0.0027705967455274446 |
rxn01200_c0 | 0.028906695826423134 |
rxn01241_c0 | 0.09615338892205788 |
rxn05332_c0 | 0.05726551767962424 |
rxn00438_c0 | 0.00046176612425031377 |
rxn00763_c0 | 0.007158189709953029 |
rxn02473_c0 | 0.02207843116066436 |
rxn01434_c0 | 0.06963954833281986 |
rxn00912_c0 | 0.0009235322485093306 |
rxn09069_c0 | -0.0036281054614534696 |
rxn00122_c0 | 0.00046176612425026915 |
rxn06076_c0 | -0.0018140527307385424 |
rxn05344_c0 | 0.057265517679624234 |
rxn01521_c0 | -1.1811525038933707e-14 |
rxn03394_c0 | 0.00046176612425462385 |
rxn00338_c0 | 0.0009235322485021676 |
rxn02373_c0 | -0.06963954833281985 |
rxn00085_c0 | 19.064057937899648 |
rxn00119_c0 | 0.06808892032726342 |
rxn01466_c0 | 0.01064326990235925 |
rxn00974_c0 | 13.99197979167369 |
rxn02008_c0 | 0.009257971529604133 |
rxn03904_c0 | 0.009257971529604133 |
rxn02288_c0 | 0.0004617661242545831 |
rxn10199_c0 | 0.009257971529604132 |
rxn00409_c0 | 0.1582547229759683 |
rxn05295_c0 | 0.05517001038817757 |
rxn00840_c0 | -0.0018140527307267318 |
rxn03901_c0 | 0.009257971529604133 |
rxn05326_c0 | -0.10355537532764486 |
rxn05114_c0 | 0.07320706440309556 |
rxn03164_c0 | 0.009257971529604132 |
rxn00256_c0 | -13.991979791673698 |
rxn08335_c0 | 0.04957297726805518 |
rxn06729_c0 | 0.01851594305920827 |
rxn00504_c0 | -0.05135095786806216 |
rxn01485_c0 | -0.03703188611841653 |
rxn03031_c0 | 0.0887651309340192 |
rxn00239_c0 | 0.04014774736500163 |
rxn00441_c0 | 0.0961533889220579 |
rxn00302_c0 | 0.0013852983727637642 |
rxn03130_c0 | 0.009257971529604135 |
rxn01791_c0 | 0.0009235322485093309 |
rxn00623_c0 | -0.05911737821443292 |
rxn02507_c0 | 0.013147829792305764 |
rxn08043_c0 | 0.06735161865303811 |
rxn01029_c0 | 0.000923532248504836 |
rxn08131_c0 | 0.00046176612425031697 |
rxn14333_c0 | 0.009257971529604132 |
rxn01964_c0 | 0.013147829792305764 |
rxn02341_c0 | 0.0009235322485092353 |
rxn01137_c0 | 0.002770596745527444 |
rxn03182_c0 | 0.009257971529604133 |
rxn00224_c0 | 0.0004617661242515749 |
rxn01513_c0 | 0.001814052730738549 |
rxn05333_c0 | 0.10355537532764489 |
rxn02186_c0 | 0.20359856885820407 |
rxn00209_c0 | 0.00046176612425026926 |
rxn02474_c0 | -0.000923532248504875 |
rxn00274_c0 | 0.12614474432806572 |
rxn01019_c0 | 0.06963954833281986 |
rxn02914_c0 | -0.2976378085055958 |
rxn01603_c0 | 0.0013852983727637642 |
rxn00686_c0 | -0.0031993511034933042 |
rxn09232_c0 | 0.0018140527307267318 |
rxn01286_c0 | 0.00715818970995303 |
rxn05289_c0 | 0.06274548367590692 |
rxn01973_c0 | 0.0887651309340192 |
rxn00117_c0 | 0.08479081065574494 |
rxn05343_c0 | 0.10355537532764487 |
rxn01520_c0 | 0.0018140527307385483 |
rxn03395_c0 | 0.00046176612425457924 |
rxn00330_c0 | -13.503902282187829 |
rxn03445_c0 | -0.00046176612425031675 |
rxn11663_c0 | 0.0004617661242503168 |
rxn00493_c0 | -0.04304053715028404 |
rxn00293_c0 | 0.03703188611841653 |
rxn14011_c0 | 0.009257971529604132 |
rxn21857_c0 | -1.1388686639017808e-16 |
rxn47768_c0 | -1.1388686639017805e-16 |
rxn00154_c0 | 10.982812283014148 |
rxn14419_c0 | 24.304198230714913 |
rxn08173_c0 | 43.75259930117939 |
rxn14412_c0 | 23.527771723277233 |
rxn14420_c0 | 24.304198230714913 |
rxn14415_c0 | 15.68518114885149 |
rxn15949_c0 | 0.0004617661242515749 |
rxn41452_c0 | -1.1388686639017805e-16 |
rxn39451_c0 | -0.0887651309340192 |
rxn21858_c0 | -1.1388686639017808e-16 |
rxn46694_c0 | -8.430885443645284e-19 |
rxn16794_c0 | 8.430885443645283e-19 |
rxn16776_c0 | 8.430885443645282e-19 |
rxn03396_c0 | 0.00046176612425462385 |
rxn17275_c0 | -0.0036281054614565483 |
rxn09037_c0 | 0.001385298372755119 |
rxn43581_c0 | -0.11292007380768641 |
rxn27318_c0 | -0.003628105461456549 |
rxn14061_c0 | 0.009257971529604132 |
rxn13957_c0 | 0.009257971529604132 |
rxn40037_c0 | 0.0887651309340192 |
rxn15947_c0 | 0.0004617661242502694 |
rxn19704_c0 | -0.11292007380768643 |
rxn05319_c0 | -5.249341878055617 |
rxn05195_c0 | 0.0018470644970062997 |
rxn01208_c0 | -0.10456245768786578 |
rxn02989_c0 | 1.886830162271417e-16 |
rxn05468_c0 | 20.00000000021212 |
rxn05467_c0 | -24.930034405697096 |
rxn08333_c0 | 0.0009235322485004914 |
rxn02898_c0 | 0.0009235322485004914 |
rxn10336_c0 | 0.007158189709953028 |
rxn00068_c0 | -0.0006926491863773624 |
rxn05522_c0 | 0.0004617661242515749 |
rxn05039_c0 | 0.0009235322485048757 |
rxn03536_c0 | 0.0004617661242503182 |
rxn03397_c0 | 0.00046176612425462385 |
rxn00979_c0 | 0.0013852983727637644 |
rxn11703_c0 | 0.0009235322485091654 |
rxn03537_c0 | 0.00046176612425157486 |
rxn10094_c0 | 0.00046176612425157486 |
rxn00333_c0 | 0.0013852983727637644 |
rxn03150_c0 | 0.000461766124251575 |
rxn03087_c0 | -0.0887651309340192 |
rxn03538_c0 | 0.00046176612425157486 |
rxn01213_c0 | 0.01064326990235925 |
rxn01265_c0 | -0.00046176612425457837 |
rxn00599_c0 | 0.0073882579880386896 |
rxn11702_c0 | 0.0009235322485091654 |
rxn05214_c0 | 0.0004617661242515749 |
rxn00346_c0 | 0.0009235322485093309 |
rxn02897_c0 | 0.0004617661242515749 |
rxn02831_c0 | 0.0009235322485004914 |
rxn01258_c0 | 0.0009235322485091654 |
rxn02832_c0 | -0.0009235322485091653 |
rxn00467_c0 | -0.06963954833281985 |
rxn08234_c0 | 0.00046176612425157486 |
rxn05211_c0 | -0.0009235322485091648 |
rxn09429_c0 | 0.05726551767962423 |
rxn12376_c0 | -0.0004617661242503169 |
rxn09310_c0 | 0.000461766124250317 |
rxn02304_c0 | 0.0002308830621272907 |
rxn02185_c0 | -0.20359856885820407 |
rxn04656_c0 | 17.59245362705189 |
rxn04657_c0 | 17.59245362705189 |
rxn04659_c0 | 17.59245362705189 |
rxn02226_c0 | 17.592453627051892 |
rxn04660_c0 | 17.59245362705189 |
rxn04658_c0 | 17.59245362705189 |
rxn00317_c0 | 17.592453627051892 |
bio1_biomass | 0.28859649325864234 |
EX_cpd10516_e0 | -0.0018470644970062997 |
EX_cpd00030_e0 | -0.00046176612425465107 |
EX_cpd00099_e0 | -0.00046176612425157486 |
EX_cpd00011_e0 | 24.930034405697096 |
EX_cpd00001_e0 | 5.249341878055617 |
EX_cpd00063_e0 | -0.00046176612425465107 |
EX_cpd00058_e0 | -0.0004617661242503138 |
EX_cpd00007_e0 | -20.0 |
EX_cpd00009_e0 | -0.19075351725153805 |
EX_cpd00048_e0 | -0.05957914433868449 |
EX_cpd00034_e0 | -0.00046176612425465107 |
EX_cpd00149_e0 | -0.00046176612425465107 |
EX_cpd00205_e0 | -0.0004617661242515749 |
EX_cpd00013_e0 | -2.3066699767773606 |
EX_cpd00971_e0 | -5.078889964292577e-12 |
EX_cpd15378_e0 | 0.0004617661242503169 |
EX_cpd00254_e0 | -0.00046176612425465107 |
DM_cpd11416_c0 | 0.28859649325864234 |
EX_cpd00007_e0
looks suspicious
First, I looked at the exchange reactions:
ID | Compound Name | Flux |
---|---|---|
EX_cpd10516_e0 | Iron | -0.0018470644970062997 |
EX_cpd00030_e0 | Mn2+ | -0.00046176612425465107 |
EX_cpd00099_e0 | Cl- | -0.00046176612425157486 |
EX_cpd00011_e0 | CO2 | 24.930034405697096 |
EX_cpd00001_e0 | H2O | 5.249341878055617 |
EX_cpd00063_e0 | Ca2+ | -0.00046176612425465107 |
EX_cpd00058_e0 | Cu2+ | -0.0004617661242503138 |
EX_cpd00007_e0 | O2 | -20.0 |
EX_cpd00009_e0 | Phosphate | -0.19075351725153805 |
EX_cpd00048_e0 | Sulfate | -0.05957914433868449 |
EX_cpd00034_e0 | Zn2+ | -0.00046176612425465107 |
EX_cpd00149_e0 | Co2+ | -0.00046176612425465107 |
EX_cpd00205_e0 | K+ | -0.0004617661242515749 |
EX_cpd00013_e0 | NH4+ | -2.3066699767773606 |
EX_cpd00971_e0 | Na+ | -5.078889964292577e-12 |
EX_cpd15378_e0 | Mg2+ | 0.0004617661242503169 |
EX_cpd00254_e0 | Ni2+ | -0.00046176612425465107 |
It really doesn't look like it's taking up any carbon.
This could be related to #20
I ran it on my non-gap filled model, and got no growth.
Going to close this issue, since this will come back up when I do gap filling, and I have a way to test for it easily.
In #45 I got growth on my media with no carbon source.