hgscott
commented
1 month ago I have a kind-of-working code to get gene-reaction rules for individual MetNetX reactions, but:
- Some of them are really ugly. E.g.
['( and 1510.0 and 2832.0 and 2831.0 and 1511.0 and 2830.0 and 1511.0 and 1510.0 and 2830.0 and 1510.0 and 2832.0 and 2831.0 and 1511.0 and 2830.0 and 1511.0 and 1510.0 and 2830.0 and 1510.0 and 2832.0 and 2831.0 and 1511.0 and 2830.0 and 1511.0 and 1510.0 and 2830.0 and 1510.0 and 2832.0 and 2831.0 and 1511.0 and 2830.0 and 1511.0 and 1510.0 and 2830.0)'] - I'm not sure using MetaNetX IDs is the right level, might need to do KEGG reaction IDs
In the Michelle's database table- there are a lot more rows than there are unique reactions (e.g. each different alternative enzyme or subunit gets their own row), so there may be a lot more red (where there is a mismatch between Michelle and the KBase model than is real.