feature/thebe

[danieleguido]

todo

• [x] Initial exploratory integration
• [x] Execute cells, get and use raw JSON outputs (pot. without ThebeCell)
• [x] manage execution state in zustand
• [x] top-level controls
  • [x] busy state - top level is busy if any cell is busy
  • [x] execute all
  • [x] clear all
  • [x] reset all
  • [x] restart session
• [x] per cell
  • [x] busy state
  • [x] errors
  • [x] run
  • [x] clear
  • [x] reset
• [x] Error tray example
• [x] Refactor & minimise renders
• [x] move rendering closer to current ArticleCell implementation (as we want to be able to render within the current layers/structure)
• [x] dismiss z index
• [x] dev environment setup
• [x] execution count
• [x] editing with persistent state
• [x] pass in proper kernel name - added example
• [x] bad last used date in local storage (checked this is ok e.g. 2023-11-20T09:47:36.748Z)
• [x] fix - errors at cells have gone missing
• [x] parse binderUrl
• [x] limit top level errors to server and session only
  • [x] modify react-thebe to support this
  • [x] detect server disconnect / session died (needs thebe-react 0.4.1)
• [x] source map errors
• [x] Startup Status Example
• [x] open jupyterlab button
• [x] clear saved sessions button
• [x] session name/path not being picked up
• [x] fix error tray
• [x] test and confirm a binder launch - with correct repo
• [x] testing R notebook - different kernel name
• [x] shutdown (on event, on button press)
  • [x] exit thebe mode
• [x] setup a test binder instance
• [x] test isolated mode - ❓html outputs only?
• [x] reset whole connection / shutdown?
• [x] check docker build
• [x] documentation / write up
• [ ] ~bug - build problem on netlify - configuration issue in jupyter-widgets~
• [ ] ~bug - kernel dying does not trigger error ui after shutdown is pressed~

prioritization

• ipywidgets

for discussion

• R example - this works when environment is OK and kernelName: 'IR' - this needs to be set from metadata
• test isolated mode - ❓html outputs only?
• source map errors in dependencies (cra-rewired?)

thebe changes to push upstream

• [x] connect with promise
• [x] filter event subjects in useThebeServer and useThebeSession
• [x] ship thebe src to enable sourcemaps
• [x] wait on https://github.com/executablebooks/thebe/pull/700 to fix sourcemaps in dependencies
• [x] kernelName not being picked up or applied?
• [x] disconnect signal
• [x] saved sessions - make resetting saved sessions easy?

testing notebooks

• python - https://github.com/stevejpurves/simple/blob/main/article.ipynb
• python, nested - https://github.com/stevejpurves/simple/blob/main/notebooks/nested.ipynb
• python - https://github.com/jdh-observer/jnkqqTTKW8km/blob/main/paper.ipynb
• R - https://github.com/jdh-observer/jnkqqTTKW8km/blob/main/paper.ipynb

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[stevejpurves]

deploy failing because of yalc will update this soon