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CABLE-LSM / benchcab

Tool for evaluation of CABLE land surface model
https://benchcab.readthedocs.io/en/latest/
Apache License 2.0
2 stars 4 forks source link

143 configyaml input validation #185

Closed bschroeter closed 1 year ago

bschroeter commented 1 year ago

Merged PR for input validation. It appears that the merge has added all of the recent changes as "changes" on this branch - that being said, GitHub is smart enough to put only the files I've touched into the PR. Yay!

I've put you both in as reviewers as it is quite the structural change for configuration loading/validation...

Please pay particular attention to the config validation - I think I've covered all of the tests using the schema validation, but fresh eyes would really help in case I've missed anything.

Given the adjustment to the conda meta.yml, we may consider an action or local test to validate the conda install (if we don't have it already?) - I'll open an issue for this.

Any questions, please plop it in the discussion.

codecov[bot] commented 1 year ago

Codecov Report

Merging #185 (b8a92f9) into main (f5c5d5a) will decrease coverage by 1.63%. Report is 1 commits behind head on main. The diff coverage is 100.00%.

@@            Coverage Diff             @@
##             main     #185      +/-   ##
==========================================
- Coverage   88.37%   86.74%   -1.63%     
==========================================
  Files          25       27       +2     
  Lines        1591     1396     -195     
==========================================
- Hits         1406     1211     -195     
  Misses        185      185
Files Coverage Δ
benchcab/config.py 100.00% <100.00%> (ø)
benchcab/utils/__init__.py 100.00% <100.00%> (ø)
tests/test_config.py 100.00% <100.00%> (ø)
tests/test_utils.py 100.00% <100.00%> (ø)
bschroeter commented 1 year ago

I've added a couple corrections on the schema but I may have missed some things, can you check the schema is consistent with the latest documentation on the config options?

I'll check it out and confirm.

bschroeter commented 1 year ago

It looks good but I'm worried we are loosing information in the error messages. Could we have an example of what the validation error message would look like?

I'll get you an example of failed validation. Stand by.

bschroeter commented 1 year ago

OK, the validation will throw an exception, with a list of the offending entries like so.

I think it would be useful to have a CLI routine to validate a config prior to attempting to run benchcab. I'll raise an issue for that.

(benchcab-dev) nri-080117:benchcab u1149323$ python validate_config.py
Traceback (most recent call last):
  File "/Users/u1149323/work/benchcab/validate_config.py", line 5, in <module>
    read_config(failure_path)
  File "/Users/u1149323/work/benchcab/benchcab/config.py", line 92, in read_config
    validate_config(config)
  File "/Users/u1149323/work/benchcab/benchcab/config.py", line 65, in validate_config
    raise ConfigValidationException(v)
benchcab.config.ConfigValidationException:

The following errors were raised when validating the config file.
experiment = ['unallowed value NON EXISTENT EXPERIMENT!!!']
realisations = [{1: [{'blah': ['unknown field']}]}]
bschroeter commented 1 year ago

@ccarouge, @SeanBryan51. OK, I think I have implemented all of your changes. I note the coverage has gone down by virtue of simplified config tests.

Re-requesting reviews. Thanks for the feedback!

bschroeter commented 1 year ago

Just a small comment regarding constants in internal.py.

What sort of integration tests are you doing? E.g. I usually cook up a small bash script that verifies things are working (see #182 (comment))

OK, I will take a look at your integration test example. It might be worthwhile coding this up as something that can be triggered by a developer. Perhaps including a canned example in the data/tests directory?

Regarding the internal.py example. It is a touch out of scope of this issue and I'm not familiar with the system enough yet to remove things wholesale. Perhaps we could raise issue(s) to clean up some of these items along the way to keep things clean.

I'll get back to you with those integration tests.

bschroeter commented 1 year ago

Integration tests have now been added to the data/tests directory. Just a pre canned script from @SeanBryan51's example.

PBS output attached to verify correct execution.

+ module purge
+ unset _mlshdbg
+ '[' 0 = 1 ']'
+ unset _mlre _mlIFS
+ '[' -n x ']'
+ _mlIFS='  
'
+ IFS=' '
+ '[' -n '' ']'
++ /usr/bin/tclsh /opt/Modules/v4.3.0/libexec/modulecmd.tcl bash purge
+ eval
+ _mlstatus=0
+ '[' -n x ']'
+ IFS='     
'
+ unset _mlre _mlv _mlrv _mlIFS
+ '[' -n '' ']'
+ unset _mlshdbg
+ return 0
+ module load intel-compiler/2021.1.1
+ unset _mlshdbg
+ '[' 0 = 1 ']'
+ unset _mlre _mlIFS
+ '[' -n x ']'
+ _mlIFS='  
'
+ IFS=' '
+ '[' -n '' ']'
++ /usr/bin/tclsh /opt/Modules/v4.3.0/libexec/modulecmd.tcl bash load intel-compiler/2021.1.1
+ eval 'CPATH=/apps/intel-ct/2021.1.1/compiler/linux/include;' export 'CPATH;
VT_CXX=icpc;' export 'VT_CXX;
I_MPI_F90=ifort;' export 'I_MPI_F90;
C_INCLUDE_PATH=/apps/intel-ct/2021.1.1/compiler/linux/include;' export 'C_INCLUDE_PATH;
F77=ifort;' export 'F77;
HDF5_CC=icc;' export 'HDF5_CC;
I_MPI_CXX=icpc;' export 'I_MPI_CXX;
INTEL_COMPILER_BASE=/apps/intel-ct/2021.1.1/compiler;' export 'INTEL_COMPILER_BASE;
MANPATH=/apps/intel-ct/2021.1.1/compiler/documentation/en/man/common:/opt/pbs/default/share/man::;' export 'MANPATH;
OMPI_CC=icc;' export 'OMPI_CC;
VT_FC=ifort;' export 'VT_FC;
MANPATH_modshare=/apps/intel-ct/2021.1.1/compiler/documentation/en/man/common:1::1:/opt/pbs/default/share/man:1;' export 'MANPATH_modshare;
C_INCLUDE_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1;' export 'C_INCLUDE_PATH_modshare;
F90=ifort;' export 'F90;
LD_LIBRARY_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:1:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib:1;' export 'LD_LIBRARY_PATH_modshare;
PATH=/apps/intel-ct/wrapper:/apps/intel-ct/2021.1.1/compiler/linux/bin/intel64:/apps/intel-ct/2021.1.1/compiler/linux/bin:/home/581/bjs581/work/nci_tools:/scratch/rp23/bjs581/miniconda3/bin:/scratch/rp23/bjs581/miniconda3/condabin:/opt/pbs/default/bin:/opt/nci/bin:/opt/bin:/opt/Modules/v4.3.0/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin;' export 'PATH;
HDF4_CLINKER=icc;' export 'HDF4_CLINKER;
CC=icc;' export 'CC;
HDF5_CLINKER=icc;' export 'HDF5_CLINKER;
CPLUS_INCLUDE_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1;' export 'CPLUS_INCLUDE_PATH_modshare;
LD_LIBRARY_PATH=/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:/apps/intel-ct/2021.1.1/compiler/linux/lib;' export 'LD_LIBRARY_PATH;
OMPI_F77=ifort;' export 'OMPI_F77;
LOADEDMODULES=intel-compiler/2021.1.1;' export 'LOADEDMODULES;
MODULES_LMCONFLICT=intel-compiler/2021.1.1\&intel-compiler\&o/wrappers\&o/yes-wrappers\&o/use-wrappers\&o/enable-wrappers\&o/with-wrappers\&o/no-wrappers\&o/not-wrappers\&o/disable-wrappers\&o/without-wrappers\&o/ld_library_path\&o/yes-ld_library_path\&o/use-ld_library_path\&o/enable-ld_library_path\&o/with-ld_library_path\&o/no-ld_library_path\&o/not-ld_library_path\&o/disable-ld_library_path\&o/without-ld_library_path\&o/ld_run_path\&o/yes-ld_run_path\&o/use-ld_run_path\&o/enable-ld_run_path\&o/with-ld_run_path\&o/no-ld_run_path\&o/not-ld_run_path\&o/disable-ld_run_path\&o/without-ld_run_path\&o/show-debug\&o/yes-show-debug\&o/use-show-debug\&o/enable-show-debug\&o/with-show-debug\&o/no-show-debug\&o/not-show-debug\&o/disable-show-debug\&o/without-show-debug\&o/append-paths\&o/yes-append-paths\&o/use-append-paths\&o/enable-append-paths\&o/with-append-paths\&o/no-append-paths\&o/not-append-paths\&o/disable-append-paths\&o/without-append-paths\&o/library_path\&o/yes-library_path\&o/use-library_path\&o/enable-library_path\&o/with-library_path\&o/no-library_path\&o/not-library_path\&o/disable-library_path\&o/without-library_path\&o/packaged-envvars\&o/yes-packaged-envvars\&o/use-packaged-envvars\&o/enable-packaged-envvars\&o/with-packaged-envvars\&o/no-packaged-envvars\&o/not-packaged-envvars\&o/disable-packaged-envvars\&o/without-packaged-envvars;' export 'MODULES_LMCONFLICT;
FPATH=/apps/intel-ct/2021.1.1/compiler/linux/include:/opt/Modules/v4.3.0/init/ksh-functions;' export 'FPATH;
CXX=icpc;' export 'CXX;
I_MPI_CC=icc;' export 'I_MPI_CC;
LD_RUN_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:1:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib:1;' export 'LD_RUN_PATH_modshare;
OCL_ICD_FILENAMES_modshare=/apps/intel-ct/2021.1.1/compiler/linux/lib/x64/libintelocl.so:1;' export 'OCL_ICD_FILENAMES_modshare;
LOADEDMODULES_modshare=intel-compiler/2021.1.1:1;' export 'LOADEDMODULES_modshare;
OMPI_FC=ifort;' export 'OMPI_FC;
VT_F77=ifort;' export 'VT_F77;
LD_RUN_PATH=/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:/apps/intel-ct/2021.1.1/compiler/linux/lib;' export 'LD_RUN_PATH;
OCL_ICD_FILENAMES=/apps/intel-ct/2021.1.1/compiler/linux/lib/x64/libintelocl.so;' export 'OCL_ICD_FILENAMES;
LIBRARY_PATH=/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:/apps/intel-ct/2021.1.1/compiler/linux/lib;' export 'LIBRARY_PATH;
_LMFILES_=/apps/Modules/modulefiles/intel-compiler/2021.1.1;' export '_LMFILES_;
LIBRARY_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:1:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib:1;' export 'LIBRARY_PATH_modshare;
HDF4_CC=icc;' export 'HDF4_CC;
INTEL_COMPILER_VERSION=2021.1.1;' export 'INTEL_COMPILER_VERSION;
MODULES_LMCONFLICT_modshare=intel-compiler/2021.1.1\&intel-compiler\&o/wrappers\&o/yes-wrappers\&o/use-wrappers\&o/enable-wrappers\&o/with-wrappers\&o/no-wrappers\&o/not-wrappers\&o/disable-wrappers\&o/without-wrappers\&o/ld_library_path\&o/yes-ld_library_path\&o/use-ld_library_path\&o/enable-ld_library_path\&o/with-ld_library_path\&o/no-ld_library_path\&o/not-ld_library_path\&o/disable-ld_library_path\&o/without-ld_library_path\&o/ld_run_path\&o/yes-ld_run_path\&o/use-ld_run_path\&o/enable-ld_run_path\&o/with-ld_run_path\&o/no-ld_run_path\&o/not-ld_run_path\&o/disable-ld_run_path\&o/without-ld_run_path\&o/show-debug\&o/yes-show-debug\&o/use-show-debug\&o/enable-show-debug\&o/with-show-debug\&o/no-show-debug\&o/not-show-debug\&o/disable-show-debug\&o/without-show-debug\&o/append-paths\&o/yes-append-paths\&o/use-append-paths\&o/enable-append-paths\&o/with-append-paths\&o/no-append-paths\&o/not-append-paths\&o/disable-append-paths\&o/without-append-paths\&o/library_path\&o/yes-library_path\&o/use-library_path\&o/enable-library_path\&o/with-library_path\&o/no-library_path\&o/not-library_path\&o/disable-library_path\&o/without-library_path\&o/packaged-envvars\&o/yes-packaged-envvars\&o/use-packaged-envvars\&o/enable-packaged-envvars\&o/with-packaged-envvars\&o/no-packaged-envvars\&o/not-packaged-envvars\&o/disable-packaged-envvars\&o/without-packaged-envvars:1;' export 'MODULES_LMCONFLICT_modshare;
FPATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1:/opt/Modules/v4.3.0/init/ksh-functions:1;' export 'FPATH_modshare;
CPLUS_INCLUDE_PATH=/apps/intel-ct/2021.1.1/compiler/linux/include;' export 'CPLUS_INCLUDE_PATH;
OMPI_CXX=icpc;' export 'OMPI_CXX;
VT_CC=icc;' export 'VT_CC;
VT_F90=ifort;' export 'VT_F90;
FC=ifort;' export 'FC;
I_MPI_F77=ifort;' export 'I_MPI_F77;
INTEL_COMPILER_ROOT=/apps/intel-ct/2021.1.1/compiler;' export 'INTEL_COMPILER_ROOT;
CPATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1;' export 'CPATH_modshare;
_LMFILES__modshare=/apps/Modules/modulefiles/intel-compiler/2021.1.1:1;' export '_LMFILES__modshare;
PATH_modshare=/usr/bin:1:/apps/intel-ct/wrapper:1:/apps/intel-ct/2021.1.1/compiler/linux/bin/intel64:1:/scratch/rp23/bjs581/miniconda3/condabin:1:/opt/bin:1:/opt/Modules/v4.3.0/bin:1:/bin:1:/opt/pbs/default/bin:1:/opt/nci/bin:1:/usr/sbin:1:/home/581/bjs581/work/nci_tools:1:/apps/intel-ct/2021.1.1/compiler/linux/bin:1:/scratch/rp23/bjs581/miniconda3/bin:1:/usr/local/sbin:1;' export 'PATH_modshare;
test' '0;'
++ CPATH=/apps/intel-ct/2021.1.1/compiler/linux/include
++ export CPATH
++ VT_CXX=icpc
++ export VT_CXX
++ I_MPI_F90=ifort
++ export I_MPI_F90
++ C_INCLUDE_PATH=/apps/intel-ct/2021.1.1/compiler/linux/include
++ export C_INCLUDE_PATH
++ F77=ifort
++ export F77
++ HDF5_CC=icc
++ export HDF5_CC
++ I_MPI_CXX=icpc
++ export I_MPI_CXX
++ INTEL_COMPILER_BASE=/apps/intel-ct/2021.1.1/compiler
++ export INTEL_COMPILER_BASE
++ MANPATH=/apps/intel-ct/2021.1.1/compiler/documentation/en/man/common:/opt/pbs/default/share/man::
++ export MANPATH
++ OMPI_CC=icc
++ export OMPI_CC
++ VT_FC=ifort
++ export VT_FC
++ MANPATH_modshare=/apps/intel-ct/2021.1.1/compiler/documentation/en/man/common:1::1:/opt/pbs/default/share/man:1
++ export MANPATH_modshare
++ C_INCLUDE_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1
++ export C_INCLUDE_PATH_modshare
++ F90=ifort
++ export F90
++ LD_LIBRARY_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:1:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib:1
++ export LD_LIBRARY_PATH_modshare
++ PATH=/apps/intel-ct/wrapper:/apps/intel-ct/2021.1.1/compiler/linux/bin/intel64:/apps/intel-ct/2021.1.1/compiler/linux/bin:/home/581/bjs581/work/nci_tools:/scratch/rp23/bjs581/miniconda3/bin:/scratch/rp23/bjs581/miniconda3/condabin:/opt/pbs/default/bin:/opt/nci/bin:/opt/bin:/opt/Modules/v4.3.0/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin
++ export PATH
++ HDF4_CLINKER=icc
++ export HDF4_CLINKER
++ CC=icc
++ export CC
++ HDF5_CLINKER=icc
++ export HDF5_CLINKER
++ CPLUS_INCLUDE_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1
++ export CPLUS_INCLUDE_PATH_modshare
++ LD_LIBRARY_PATH=/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:/apps/intel-ct/2021.1.1/compiler/linux/lib
++ export LD_LIBRARY_PATH
++ OMPI_F77=ifort
++ export OMPI_F77
++ LOADEDMODULES=intel-compiler/2021.1.1
++ export LOADEDMODULES
++ MODULES_LMCONFLICT='intel-compiler/2021.1.1&intel-compiler&o/wrappers&o/yes-wrappers&o/use-wrappers&o/enable-wrappers&o/with-wrappers&o/no-wrappers&o/not-wrappers&o/disable-wrappers&o/without-wrappers&o/ld_library_path&o/yes-ld_library_path&o/use-ld_library_path&o/enable-ld_library_path&o/with-ld_library_path&o/no-ld_library_path&o/not-ld_library_path&o/disable-ld_library_path&o/without-ld_library_path&o/ld_run_path&o/yes-ld_run_path&o/use-ld_run_path&o/enable-ld_run_path&o/with-ld_run_path&o/no-ld_run_path&o/not-ld_run_path&o/disable-ld_run_path&o/without-ld_run_path&o/show-debug&o/yes-show-debug&o/use-show-debug&o/enable-show-debug&o/with-show-debug&o/no-show-debug&o/not-show-debug&o/disable-show-debug&o/without-show-debug&o/append-paths&o/yes-append-paths&o/use-append-paths&o/enable-append-paths&o/with-append-paths&o/no-append-paths&o/not-append-paths&o/disable-append-paths&o/without-append-paths&o/library_path&o/yes-library_path&o/use-library_path&o/enable-library_path&o/with-library_path&o/no-library_path&o/not-library_path&o/disable-library_path&o/without-library_path&o/packaged-envvars&o/yes-packaged-envvars&o/use-packaged-envvars&o/enable-packaged-envvars&o/with-packaged-envvars&o/no-packaged-envvars&o/not-packaged-envvars&o/disable-packaged-envvars&o/without-packaged-envvars'
++ export MODULES_LMCONFLICT
++ FPATH=/apps/intel-ct/2021.1.1/compiler/linux/include:/opt/Modules/v4.3.0/init/ksh-functions
++ export FPATH
++ CXX=icpc
++ export CXX
++ I_MPI_CC=icc
++ export I_MPI_CC
++ LD_RUN_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:1:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib:1
++ export LD_RUN_PATH_modshare
++ OCL_ICD_FILENAMES_modshare=/apps/intel-ct/2021.1.1/compiler/linux/lib/x64/libintelocl.so:1
++ export OCL_ICD_FILENAMES_modshare
++ LOADEDMODULES_modshare=intel-compiler/2021.1.1:1
++ export LOADEDMODULES_modshare
++ OMPI_FC=ifort
++ export OMPI_FC
++ VT_F77=ifort
++ export VT_F77
++ LD_RUN_PATH=/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:/apps/intel-ct/2021.1.1/compiler/linux/lib
++ export LD_RUN_PATH
++ OCL_ICD_FILENAMES=/apps/intel-ct/2021.1.1/compiler/linux/lib/x64/libintelocl.so
++ export OCL_ICD_FILENAMES
++ LIBRARY_PATH=/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:/apps/intel-ct/2021.1.1/compiler/linux/lib
++ export LIBRARY_PATH
++ _LMFILES_=/apps/Modules/modulefiles/intel-compiler/2021.1.1
++ export _LMFILES_
++ LIBRARY_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:1:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib:1
++ export LIBRARY_PATH_modshare
++ HDF4_CC=icc
++ export HDF4_CC
++ INTEL_COMPILER_VERSION=2021.1.1
++ export INTEL_COMPILER_VERSION
++ MODULES_LMCONFLICT_modshare='intel-compiler/2021.1.1&intel-compiler&o/wrappers&o/yes-wrappers&o/use-wrappers&o/enable-wrappers&o/with-wrappers&o/no-wrappers&o/not-wrappers&o/disable-wrappers&o/without-wrappers&o/ld_library_path&o/yes-ld_library_path&o/use-ld_library_path&o/enable-ld_library_path&o/with-ld_library_path&o/no-ld_library_path&o/not-ld_library_path&o/disable-ld_library_path&o/without-ld_library_path&o/ld_run_path&o/yes-ld_run_path&o/use-ld_run_path&o/enable-ld_run_path&o/with-ld_run_path&o/no-ld_run_path&o/not-ld_run_path&o/disable-ld_run_path&o/without-ld_run_path&o/show-debug&o/yes-show-debug&o/use-show-debug&o/enable-show-debug&o/with-show-debug&o/no-show-debug&o/not-show-debug&o/disable-show-debug&o/without-show-debug&o/append-paths&o/yes-append-paths&o/use-append-paths&o/enable-append-paths&o/with-append-paths&o/no-append-paths&o/not-append-paths&o/disable-append-paths&o/without-append-paths&o/library_path&o/yes-library_path&o/use-library_path&o/enable-library_path&o/with-library_path&o/no-library_path&o/not-library_path&o/disable-library_path&o/without-library_path&o/packaged-envvars&o/yes-packaged-envvars&o/use-packaged-envvars&o/enable-packaged-envvars&o/with-packaged-envvars&o/no-packaged-envvars&o/not-packaged-envvars&o/disable-packaged-envvars&o/without-packaged-envvars:1'
++ export MODULES_LMCONFLICT_modshare
++ FPATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1:/opt/Modules/v4.3.0/init/ksh-functions:1
++ export FPATH_modshare
++ CPLUS_INCLUDE_PATH=/apps/intel-ct/2021.1.1/compiler/linux/include
++ export CPLUS_INCLUDE_PATH
++ OMPI_CXX=icpc
++ export OMPI_CXX
++ VT_CC=icc
++ export VT_CC
++ VT_F90=ifort
++ export VT_F90
++ FC=ifort
++ export FC
++ I_MPI_F77=ifort
++ export I_MPI_F77
++ INTEL_COMPILER_ROOT=/apps/intel-ct/2021.1.1/compiler
++ export INTEL_COMPILER_ROOT
++ CPATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1
++ export CPATH_modshare
++ _LMFILES__modshare=/apps/Modules/modulefiles/intel-compiler/2021.1.1:1
++ export _LMFILES__modshare
++ PATH_modshare=/usr/bin:1:/apps/intel-ct/wrapper:1:/apps/intel-ct/2021.1.1/compiler/linux/bin/intel64:1:/scratch/rp23/bjs581/miniconda3/condabin:1:/opt/bin:1:/opt/Modules/v4.3.0/bin:1:/bin:1:/opt/pbs/default/bin:1:/opt/nci/bin:1:/usr/sbin:1:/home/581/bjs581/work/nci_tools:1:/apps/intel-ct/2021.1.1/compiler/linux/bin:1:/scratch/rp23/bjs581/miniconda3/bin:1:/usr/local/sbin:1
++ export PATH_modshare
++ test 0
+ _mlstatus=0
+ '[' -n x ']'
+ IFS='     
'
+ unset _mlre _mlv _mlrv _mlIFS
+ '[' -n '' ']'
+ unset _mlshdbg
+ return 0
+ module load netcdf/4.7.4
+ unset _mlshdbg
+ '[' 0 = 1 ']'
+ unset _mlre _mlIFS
+ '[' -n x ']'
+ _mlIFS='  
'
+ IFS=' '
+ '[' -n '' ']'
++ /usr/bin/tclsh /opt/Modules/v4.3.0/libexec/modulecmd.tcl bash load netcdf/4.7.4
+ eval 'LD_RUN_PATH=/apps/netcdf/4.7.4/lib:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:/apps/intel-ct/2021.1.1/compiler/linux/lib;' export 'LD_RUN_PATH;
LD_LIBRARY_PATH=/apps/netcdf/4.7.4/lib:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:/apps/intel-ct/2021.1.1/compiler/linux/lib;' export 'LD_LIBRARY_PATH;
CPLUS_INCLUDE_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1:/apps/netcdf/4.7.4/include:1;' export 'CPLUS_INCLUDE_PATH_modshare;
CPATH=/apps/netcdf/4.7.4/include:/apps/intel-ct/2021.1.1/compiler/linux/include;' export 'CPATH;
INFOPATH=/apps/netcdf/4.7.4/share/info;' export 'INFOPATH;
MANPATH=/apps/netcdf/4.7.4/share/man:/apps/intel-ct/2021.1.1/compiler/documentation/en/man/common:/opt/pbs/default/share/man::;' export 'MANPATH;
LIBRARY_PATH=/apps/netcdf/4.7.4/lib:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:/apps/intel-ct/2021.1.1/compiler/linux/lib;' export 'LIBRARY_PATH;
_LMFILES_=/apps/Modules/modulefiles/intel-compiler/2021.1.1:/apps/Modules/modulefiles/netcdf/4.7.4;' export '_LMFILES_;
LOADEDMODULES=intel-compiler/2021.1.1:netcdf/4.7.4;' export 'LOADEDMODULES;
MODULES_LMCONFLICT=intel-compiler/2021.1.1\&intel-compiler\&o/wrappers\&o/yes-wrappers\&o/use-wrappers\&o/enable-wrappers\&o/with-wrappers\&o/no-wrappers\&o/not-wrappers\&o/disable-wrappers\&o/without-wrappers\&o/ld_library_path\&o/yes-ld_library_path\&o/use-ld_library_path\&o/enable-ld_library_path\&o/with-ld_library_path\&o/no-ld_library_path\&o/not-ld_library_path\&o/disable-ld_library_path\&o/without-ld_library_path\&o/ld_run_path\&o/yes-ld_run_path\&o/use-ld_run_path\&o/enable-ld_run_path\&o/with-ld_run_path\&o/no-ld_run_path\&o/not-ld_run_path\&o/disable-ld_run_path\&o/without-ld_run_path\&o/show-debug\&o/yes-show-debug\&o/use-show-debug\&o/enable-show-debug\&o/with-show-debug\&o/no-show-debug\&o/not-show-debug\&o/disable-show-debug\&o/without-show-debug\&o/append-paths\&o/yes-append-paths\&o/use-append-paths\&o/enable-append-paths\&o/with-append-paths\&o/no-append-paths\&o/not-append-paths\&o/disable-append-paths\&o/without-append-paths\&o/library_path\&o/yes-library_path\&o/use-library_path\&o/enable-library_path\&o/with-library_path\&o/no-library_path\&o/not-library_path\&o/disable-library_path\&o/without-library_path\&o/packaged-envvars\&o/yes-packaged-envvars\&o/use-packaged-envvars\&o/enable-packaged-envvars\&o/with-packaged-envvars\&o/no-packaged-envvars\&o/not-packaged-envvars\&o/disable-packaged-envvars\&o/without-packaged-envvars:netcdf/4.7.4\&netcdf\&o/ld_library_path\&o/yes-ld_library_path\&o/use-ld_library_path\&o/enable-ld_library_path\&o/with-ld_library_path\&o/no-ld_library_path\&o/not-ld_library_path\&o/disable-ld_library_path\&o/without-ld_library_path\&o/ld_run_path\&o/yes-ld_run_path\&o/use-ld_run_path\&o/enable-ld_run_path\&o/with-ld_run_path\&o/no-ld_run_path\&o/not-ld_run_path\&o/disable-ld_run_path\&o/without-ld_run_path\&o/show-debug\&o/yes-show-debug\&o/use-show-debug\&o/enable-show-debug\&o/with-show-debug\&o/no-show-debug\&o/not-show-debug\&o/disable-show-debug\&o/without-show-debug\&o/append-paths\&o/yes-append-paths\&o/use-append-paths\&o/enable-append-paths\&o/with-append-paths\&o/no-append-paths\&o/not-append-paths\&o/disable-append-paths\&o/without-append-paths\&o/library_path\&o/yes-library_path\&o/use-library_path\&o/enable-library_path\&o/with-library_path\&o/no-library_path\&o/not-library_path\&o/disable-library_path\&o/without-library_path\&o/packaged-envvars\&o/yes-packaged-envvars\&o/use-packaged-envvars\&o/enable-packaged-envvars\&o/with-packaged-envvars\&o/no-packaged-envvars\&o/not-packaged-envvars\&o/disable-packaged-envvars\&o/without-packaged-envvars;' export 'MODULES_LMCONFLICT;
INFOPATH_modshare=/apps/netcdf/4.7.4/share/info:1;' export 'INFOPATH_modshare;
MANPATH_modshare=/apps/intel-ct/2021.1.1/compiler/documentation/en/man/common:1::1:/apps/netcdf/4.7.4/share/man:1:/opt/pbs/default/share/man:1;' export 'MANPATH_modshare;
PKG_CONFIG_PATH=/apps/netcdf/4.7.4/lib/pkgconfig:/half-root/usr/lib64/pkgconfig;' export 'PKG_CONFIG_PATH;
FPATH=/apps/netcdf/4.7.4/include:/apps/intel-ct/2021.1.1/compiler/linux/include:/opt/Modules/v4.3.0/init/ksh-functions;' export 'FPATH;
LIBRARY_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:1:/apps/netcdf/4.7.4/lib:1:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib:1;' export 'LIBRARY_PATH_modshare;
NETCDF=/apps/netcdf/4.7.4;' export 'NETCDF;
C_INCLUDE_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1:/apps/netcdf/4.7.4/include:1;' export 'C_INCLUDE_PATH_modshare;
MODULES_LMCONFLICT_modshare=intel-compiler/2021.1.1\&intel-compiler\&o/wrappers\&o/yes-wrappers\&o/use-wrappers\&o/enable-wrappers\&o/with-wrappers\&o/no-wrappers\&o/not-wrappers\&o/disable-wrappers\&o/without-wrappers\&o/ld_library_path\&o/yes-ld_library_path\&o/use-ld_library_path\&o/enable-ld_library_path\&o/with-ld_library_path\&o/no-ld_library_path\&o/not-ld_library_path\&o/disable-ld_library_path\&o/without-ld_library_path\&o/ld_run_path\&o/yes-ld_run_path\&o/use-ld_run_path\&o/enable-ld_run_path\&o/with-ld_run_path\&o/no-ld_run_path\&o/not-ld_run_path\&o/disable-ld_run_path\&o/without-ld_run_path\&o/show-debug\&o/yes-show-debug\&o/use-show-debug\&o/enable-show-debug\&o/with-show-debug\&o/no-show-debug\&o/not-show-debug\&o/disable-show-debug\&o/without-show-debug\&o/append-paths\&o/yes-append-paths\&o/use-append-paths\&o/enable-append-paths\&o/with-append-paths\&o/no-append-paths\&o/not-append-paths\&o/disable-append-paths\&o/without-append-paths\&o/library_path\&o/yes-library_path\&o/use-library_path\&o/enable-library_path\&o/with-library_path\&o/no-library_path\&o/not-library_path\&o/disable-library_path\&o/without-library_path\&o/packaged-envvars\&o/yes-packaged-envvars\&o/use-packaged-envvars\&o/enable-packaged-envvars\&o/with-packaged-envvars\&o/no-packaged-envvars\&o/not-packaged-envvars\&o/disable-packaged-envvars\&o/without-packaged-envvars:1:netcdf/4.7.4\&netcdf\&o/ld_library_path\&o/yes-ld_library_path\&o/use-ld_library_path\&o/enable-ld_library_path\&o/with-ld_library_path\&o/no-ld_library_path\&o/not-ld_library_path\&o/disable-ld_library_path\&o/without-ld_library_path\&o/ld_run_path\&o/yes-ld_run_path\&o/use-ld_run_path\&o/enable-ld_run_path\&o/with-ld_run_path\&o/no-ld_run_path\&o/not-ld_run_path\&o/disable-ld_run_path\&o/without-ld_run_path\&o/show-debug\&o/yes-show-debug\&o/use-show-debug\&o/enable-show-debug\&o/with-show-debug\&o/no-show-debug\&o/not-show-debug\&o/disable-show-debug\&o/without-show-debug\&o/append-paths\&o/yes-append-paths\&o/use-append-paths\&o/enable-append-paths\&o/with-append-paths\&o/no-append-paths\&o/not-append-paths\&o/disable-append-paths\&o/without-append-paths\&o/library_path\&o/yes-library_path\&o/use-library_path\&o/enable-library_path\&o/with-library_path\&o/no-library_path\&o/not-library_path\&o/disable-library_path\&o/without-library_path\&o/packaged-envvars\&o/yes-packaged-envvars\&o/use-packaged-envvars\&o/enable-packaged-envvars\&o/with-packaged-envvars\&o/no-packaged-envvars\&o/not-packaged-envvars\&o/disable-packaged-envvars\&o/without-packaged-envvars:1;' export 'MODULES_LMCONFLICT_modshare;
PKG_CONFIG_PATH_modshare=/apps/netcdf/4.7.4/lib/pkgconfig:1:/half-root/usr/lib64/pkgconfig:1;' export 'PKG_CONFIG_PATH_modshare;
FPATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1:/opt/Modules/v4.3.0/init/ksh-functions:1:/apps/netcdf/4.7.4/include:1;' export 'FPATH_modshare;
NETCDF_BASE=/apps/netcdf/4.7.4;' export 'NETCDF_BASE;
CPLUS_INCLUDE_PATH=/apps/netcdf/4.7.4/include:/apps/intel-ct/2021.1.1/compiler/linux/include;' export 'CPLUS_INCLUDE_PATH;
NETCDF_VERSION=4.7.4;' export 'NETCDF_VERSION;
LD_RUN_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:1:/apps/netcdf/4.7.4/lib:1:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib:1;' export 'LD_RUN_PATH_modshare;
LD_LIBRARY_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:1:/apps/netcdf/4.7.4/lib:1:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib:1;' export 'LD_LIBRARY_PATH_modshare;
C_INCLUDE_PATH=/apps/netcdf/4.7.4/include:/apps/intel-ct/2021.1.1/compiler/linux/include;' export 'C_INCLUDE_PATH;
CPATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1:/apps/netcdf/4.7.4/include:1;' export 'CPATH_modshare;
_LMFILES__modshare=/apps/Modules/modulefiles/netcdf/4.7.4:1:/apps/Modules/modulefiles/intel-compiler/2021.1.1:1;' export '_LMFILES__modshare;
LOADEDMODULES_modshare=netcdf/4.7.4:1:intel-compiler/2021.1.1:1;' export 'LOADEDMODULES_modshare;
PATH=/apps/netcdf/4.7.4/bin:/apps/intel-ct/wrapper:/apps/intel-ct/2021.1.1/compiler/linux/bin/intel64:/apps/intel-ct/2021.1.1/compiler/linux/bin:/home/581/bjs581/work/nci_tools:/scratch/rp23/bjs581/miniconda3/bin:/scratch/rp23/bjs581/miniconda3/condabin:/opt/pbs/default/bin:/opt/nci/bin:/opt/bin:/opt/Modules/v4.3.0/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin;' export 'PATH;
NETCDF_ROOT=/apps/netcdf/4.7.4;' export 'NETCDF_ROOT;
PATH_modshare=/apps/netcdf/4.7.4/bin:1:/usr/bin:1:/apps/intel-ct/wrapper:1:/apps/intel-ct/2021.1.1/compiler/linux/bin/intel64:1:/scratch/rp23/bjs581/miniconda3/condabin:1:/opt/bin:1:/opt/Modules/v4.3.0/bin:1:/bin:1:/opt/pbs/default/bin:1:/opt/nci/bin:1:/usr/sbin:1:/home/581/bjs581/work/nci_tools:1:/scratch/rp23/bjs581/miniconda3/bin:1:/apps/intel-ct/2021.1.1/compiler/linux/bin:1:/usr/local/sbin:1;' export 'PATH_modshare;
test' '0;'
++ LD_RUN_PATH=/apps/netcdf/4.7.4/lib:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:/apps/intel-ct/2021.1.1/compiler/linux/lib
++ export LD_RUN_PATH
++ LD_LIBRARY_PATH=/apps/netcdf/4.7.4/lib:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:/apps/intel-ct/2021.1.1/compiler/linux/lib
++ export LD_LIBRARY_PATH
++ CPLUS_INCLUDE_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1:/apps/netcdf/4.7.4/include:1
++ export CPLUS_INCLUDE_PATH_modshare
++ CPATH=/apps/netcdf/4.7.4/include:/apps/intel-ct/2021.1.1/compiler/linux/include
++ export CPATH
++ INFOPATH=/apps/netcdf/4.7.4/share/info
++ export INFOPATH
++ MANPATH=/apps/netcdf/4.7.4/share/man:/apps/intel-ct/2021.1.1/compiler/documentation/en/man/common:/opt/pbs/default/share/man::
++ export MANPATH
++ LIBRARY_PATH=/apps/netcdf/4.7.4/lib:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:/apps/intel-ct/2021.1.1/compiler/linux/lib
++ export LIBRARY_PATH
++ _LMFILES_=/apps/Modules/modulefiles/intel-compiler/2021.1.1:/apps/Modules/modulefiles/netcdf/4.7.4
++ export _LMFILES_
++ LOADEDMODULES=intel-compiler/2021.1.1:netcdf/4.7.4
++ export LOADEDMODULES
++ MODULES_LMCONFLICT='intel-compiler/2021.1.1&intel-compiler&o/wrappers&o/yes-wrappers&o/use-wrappers&o/enable-wrappers&o/with-wrappers&o/no-wrappers&o/not-wrappers&o/disable-wrappers&o/without-wrappers&o/ld_library_path&o/yes-ld_library_path&o/use-ld_library_path&o/enable-ld_library_path&o/with-ld_library_path&o/no-ld_library_path&o/not-ld_library_path&o/disable-ld_library_path&o/without-ld_library_path&o/ld_run_path&o/yes-ld_run_path&o/use-ld_run_path&o/enable-ld_run_path&o/with-ld_run_path&o/no-ld_run_path&o/not-ld_run_path&o/disable-ld_run_path&o/without-ld_run_path&o/show-debug&o/yes-show-debug&o/use-show-debug&o/enable-show-debug&o/with-show-debug&o/no-show-debug&o/not-show-debug&o/disable-show-debug&o/without-show-debug&o/append-paths&o/yes-append-paths&o/use-append-paths&o/enable-append-paths&o/with-append-paths&o/no-append-paths&o/not-append-paths&o/disable-append-paths&o/without-append-paths&o/library_path&o/yes-library_path&o/use-library_path&o/enable-library_path&o/with-library_path&o/no-library_path&o/not-library_path&o/disable-library_path&o/without-library_path&o/packaged-envvars&o/yes-packaged-envvars&o/use-packaged-envvars&o/enable-packaged-envvars&o/with-packaged-envvars&o/no-packaged-envvars&o/not-packaged-envvars&o/disable-packaged-envvars&o/without-packaged-envvars:netcdf/4.7.4&netcdf&o/ld_library_path&o/yes-ld_library_path&o/use-ld_library_path&o/enable-ld_library_path&o/with-ld_library_path&o/no-ld_library_path&o/not-ld_library_path&o/disable-ld_library_path&o/without-ld_library_path&o/ld_run_path&o/yes-ld_run_path&o/use-ld_run_path&o/enable-ld_run_path&o/with-ld_run_path&o/no-ld_run_path&o/not-ld_run_path&o/disable-ld_run_path&o/without-ld_run_path&o/show-debug&o/yes-show-debug&o/use-show-debug&o/enable-show-debug&o/with-show-debug&o/no-show-debug&o/not-show-debug&o/disable-show-debug&o/without-show-debug&o/append-paths&o/yes-append-paths&o/use-append-paths&o/enable-append-paths&o/with-append-paths&o/no-append-paths&o/not-append-paths&o/disable-append-paths&o/without-append-paths&o/library_path&o/yes-library_path&o/use-library_path&o/enable-library_path&o/with-library_path&o/no-library_path&o/not-library_path&o/disable-library_path&o/without-library_path&o/packaged-envvars&o/yes-packaged-envvars&o/use-packaged-envvars&o/enable-packaged-envvars&o/with-packaged-envvars&o/no-packaged-envvars&o/not-packaged-envvars&o/disable-packaged-envvars&o/without-packaged-envvars'
++ export MODULES_LMCONFLICT
++ INFOPATH_modshare=/apps/netcdf/4.7.4/share/info:1
++ export INFOPATH_modshare
++ MANPATH_modshare=/apps/intel-ct/2021.1.1/compiler/documentation/en/man/common:1::1:/apps/netcdf/4.7.4/share/man:1:/opt/pbs/default/share/man:1
++ export MANPATH_modshare
++ PKG_CONFIG_PATH=/apps/netcdf/4.7.4/lib/pkgconfig:/half-root/usr/lib64/pkgconfig
++ export PKG_CONFIG_PATH
++ FPATH=/apps/netcdf/4.7.4/include:/apps/intel-ct/2021.1.1/compiler/linux/include:/opt/Modules/v4.3.0/init/ksh-functions
++ export FPATH
++ LIBRARY_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:1:/apps/netcdf/4.7.4/lib:1:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib:1
++ export LIBRARY_PATH_modshare
++ NETCDF=/apps/netcdf/4.7.4
++ export NETCDF
++ C_INCLUDE_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1:/apps/netcdf/4.7.4/include:1
++ export C_INCLUDE_PATH_modshare
++ MODULES_LMCONFLICT_modshare='intel-compiler/2021.1.1&intel-compiler&o/wrappers&o/yes-wrappers&o/use-wrappers&o/enable-wrappers&o/with-wrappers&o/no-wrappers&o/not-wrappers&o/disable-wrappers&o/without-wrappers&o/ld_library_path&o/yes-ld_library_path&o/use-ld_library_path&o/enable-ld_library_path&o/with-ld_library_path&o/no-ld_library_path&o/not-ld_library_path&o/disable-ld_library_path&o/without-ld_library_path&o/ld_run_path&o/yes-ld_run_path&o/use-ld_run_path&o/enable-ld_run_path&o/with-ld_run_path&o/no-ld_run_path&o/not-ld_run_path&o/disable-ld_run_path&o/without-ld_run_path&o/show-debug&o/yes-show-debug&o/use-show-debug&o/enable-show-debug&o/with-show-debug&o/no-show-debug&o/not-show-debug&o/disable-show-debug&o/without-show-debug&o/append-paths&o/yes-append-paths&o/use-append-paths&o/enable-append-paths&o/with-append-paths&o/no-append-paths&o/not-append-paths&o/disable-append-paths&o/without-append-paths&o/library_path&o/yes-library_path&o/use-library_path&o/enable-library_path&o/with-library_path&o/no-library_path&o/not-library_path&o/disable-library_path&o/without-library_path&o/packaged-envvars&o/yes-packaged-envvars&o/use-packaged-envvars&o/enable-packaged-envvars&o/with-packaged-envvars&o/no-packaged-envvars&o/not-packaged-envvars&o/disable-packaged-envvars&o/without-packaged-envvars:1:netcdf/4.7.4&netcdf&o/ld_library_path&o/yes-ld_library_path&o/use-ld_library_path&o/enable-ld_library_path&o/with-ld_library_path&o/no-ld_library_path&o/not-ld_library_path&o/disable-ld_library_path&o/without-ld_library_path&o/ld_run_path&o/yes-ld_run_path&o/use-ld_run_path&o/enable-ld_run_path&o/with-ld_run_path&o/no-ld_run_path&o/not-ld_run_path&o/disable-ld_run_path&o/without-ld_run_path&o/show-debug&o/yes-show-debug&o/use-show-debug&o/enable-show-debug&o/with-show-debug&o/no-show-debug&o/not-show-debug&o/disable-show-debug&o/without-show-debug&o/append-paths&o/yes-append-paths&o/use-append-paths&o/enable-append-paths&o/with-append-paths&o/no-append-paths&o/not-append-paths&o/disable-append-paths&o/without-append-paths&o/library_path&o/yes-library_path&o/use-library_path&o/enable-library_path&o/with-library_path&o/no-library_path&o/not-library_path&o/disable-library_path&o/without-library_path&o/packaged-envvars&o/yes-packaged-envvars&o/use-packaged-envvars&o/enable-packaged-envvars&o/with-packaged-envvars&o/no-packaged-envvars&o/not-packaged-envvars&o/disable-packaged-envvars&o/without-packaged-envvars:1'
++ export MODULES_LMCONFLICT_modshare
++ PKG_CONFIG_PATH_modshare=/apps/netcdf/4.7.4/lib/pkgconfig:1:/half-root/usr/lib64/pkgconfig:1
++ export PKG_CONFIG_PATH_modshare
++ FPATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1:/opt/Modules/v4.3.0/init/ksh-functions:1:/apps/netcdf/4.7.4/include:1
++ export FPATH_modshare
++ NETCDF_BASE=/apps/netcdf/4.7.4
++ export NETCDF_BASE
++ CPLUS_INCLUDE_PATH=/apps/netcdf/4.7.4/include:/apps/intel-ct/2021.1.1/compiler/linux/include
++ export CPLUS_INCLUDE_PATH
++ NETCDF_VERSION=4.7.4
++ export NETCDF_VERSION
++ LD_RUN_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:1:/apps/netcdf/4.7.4/lib:1:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib:1
++ export LD_RUN_PATH_modshare
++ LD_LIBRARY_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:1:/apps/netcdf/4.7.4/lib:1:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib:1
++ export LD_LIBRARY_PATH_modshare
++ C_INCLUDE_PATH=/apps/netcdf/4.7.4/include:/apps/intel-ct/2021.1.1/compiler/linux/include
++ export C_INCLUDE_PATH
++ CPATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1:/apps/netcdf/4.7.4/include:1
++ export CPATH_modshare
++ _LMFILES__modshare=/apps/Modules/modulefiles/netcdf/4.7.4:1:/apps/Modules/modulefiles/intel-compiler/2021.1.1:1
++ export _LMFILES__modshare
++ LOADEDMODULES_modshare=netcdf/4.7.4:1:intel-compiler/2021.1.1:1
++ export LOADEDMODULES_modshare
++ PATH=/apps/netcdf/4.7.4/bin:/apps/intel-ct/wrapper:/apps/intel-ct/2021.1.1/compiler/linux/bin/intel64:/apps/intel-ct/2021.1.1/compiler/linux/bin:/home/581/bjs581/work/nci_tools:/scratch/rp23/bjs581/miniconda3/bin:/scratch/rp23/bjs581/miniconda3/condabin:/opt/pbs/default/bin:/opt/nci/bin:/opt/bin:/opt/Modules/v4.3.0/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin
++ export PATH
++ NETCDF_ROOT=/apps/netcdf/4.7.4
++ export NETCDF_ROOT
++ PATH_modshare=/apps/netcdf/4.7.4/bin:1:/usr/bin:1:/apps/intel-ct/wrapper:1:/apps/intel-ct/2021.1.1/compiler/linux/bin/intel64:1:/scratch/rp23/bjs581/miniconda3/condabin:1:/opt/bin:1:/opt/Modules/v4.3.0/bin:1:/bin:1:/opt/pbs/default/bin:1:/opt/nci/bin:1:/usr/sbin:1:/home/581/bjs581/work/nci_tools:1:/scratch/rp23/bjs581/miniconda3/bin:1:/apps/intel-ct/2021.1.1/compiler/linux/bin:1:/usr/local/sbin:1
++ export PATH_modshare
++ test 0
+ _mlstatus=0
+ '[' -n x ']'
+ IFS='     
'
+ unset _mlre _mlv _mlrv _mlIFS
+ '[' -n '' ']'
+ unset _mlshdbg
+ return 0
+ module load openmpi/4.1.0
+ unset _mlshdbg
+ '[' 0 = 1 ']'
+ unset _mlre _mlIFS
+ '[' -n x ']'
+ _mlIFS='  
'
+ IFS=' '
+ '[' -n '' ']'
++ /usr/bin/tclsh /opt/Modules/v4.3.0/libexec/modulecmd.tcl bash load openmpi/4.1.0
+ eval 'LD_RUN_PATH=/apps/openmpi/4.1.0/lib:/apps/openmpi/4.1.0/lib/profilers:/apps/netcdf/4.7.4/lib:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:/apps/intel-ct/2021.1.1/compiler/linux/lib;' export 'LD_RUN_PATH;
LD_LIBRARY_PATH=/apps/openmpi/4.1.0/lib:/apps/openmpi/4.1.0/lib/profilers:/apps/netcdf/4.7.4/lib:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:/apps/intel-ct/2021.1.1/compiler/linux/lib;' export 'LD_LIBRARY_PATH;
CPATH=/apps/openmpi/4.1.0/include:/apps/netcdf/4.7.4/include:/apps/intel-ct/2021.1.1/compiler/linux/include;' export 'CPATH;
CPLUS_INCLUDE_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1:/apps/openmpi/4.1.0/include:1:/apps/netcdf/4.7.4/include:1;' export 'CPLUS_INCLUDE_PATH_modshare;
OMPI_ROOT=/apps/openmpi/4.1.0;' export 'OMPI_ROOT;
VT_MAX_FLUSHES=0;' export 'VT_MAX_FLUSHES;
MANPATH=/apps/openmpi/4.1.0/share/man:/apps/netcdf/4.7.4/share/man:/apps/intel-ct/2021.1.1/compiler/documentation/en/man/common:/opt/pbs/default/share/man::;' export 'MANPATH;
LIBRARY_PATH=/apps/openmpi/4.1.0/lib:/apps/openmpi/4.1.0/lib/profilers:/apps/netcdf/4.7.4/lib:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:/apps/intel-ct/2021.1.1/compiler/linux/lib;' export 'LIBRARY_PATH;
_LMFILES_=/apps/Modules/modulefiles/intel-compiler/2021.1.1:/apps/Modules/modulefiles/netcdf/4.7.4:/apps/Modules/modulefiles/openmpi/4.1.0;' export '_LMFILES_;
LOADEDMODULES=intel-compiler/2021.1.1:netcdf/4.7.4:openmpi/4.1.0;' export 'LOADEDMODULES;
OMPI_VERSION=4.1.0;' export 'OMPI_VERSION;
MODULES_LMCONFLICT=intel-compiler/2021.1.1\&intel-compiler\&o/wrappers\&o/yes-wrappers\&o/use-wrappers\&o/enable-wrappers\&o/with-wrappers\&o/no-wrappers\&o/not-wrappers\&o/disable-wrappers\&o/without-wrappers\&o/ld_library_path\&o/yes-ld_library_path\&o/use-ld_library_path\&o/enable-ld_library_path\&o/with-ld_library_path\&o/no-ld_library_path\&o/not-ld_library_path\&o/disable-ld_library_path\&o/without-ld_library_path\&o/ld_run_path\&o/yes-ld_run_path\&o/use-ld_run_path\&o/enable-ld_run_path\&o/with-ld_run_path\&o/no-ld_run_path\&o/not-ld_run_path\&o/disable-ld_run_path\&o/without-ld_run_path\&o/show-debug\&o/yes-show-debug\&o/use-show-debug\&o/enable-show-debug\&o/with-show-debug\&o/no-show-debug\&o/not-show-debug\&o/disable-show-debug\&o/without-show-debug\&o/append-paths\&o/yes-append-paths\&o/use-append-paths\&o/enable-append-paths\&o/with-append-paths\&o/no-append-paths\&o/not-append-paths\&o/disable-append-paths\&o/without-append-paths\&o/library_path\&o/yes-library_path\&o/use-library_path\&o/enable-library_path\&o/with-library_path\&o/no-library_path\&o/not-library_path\&o/disable-library_path\&o/without-library_path\&o/packaged-envvars\&o/yes-packaged-envvars\&o/use-packaged-envvars\&o/enable-packaged-envvars\&o/with-packaged-envvars\&o/no-packaged-envvars\&o/not-packaged-envvars\&o/disable-packaged-envvars\&o/without-packaged-envvars:netcdf/4.7.4\&netcdf\&o/ld_library_path\&o/yes-ld_library_path\&o/use-ld_library_path\&o/enable-ld_library_path\&o/with-ld_library_path\&o/no-ld_library_path\&o/not-ld_library_path\&o/disable-ld_library_path\&o/without-ld_library_path\&o/ld_run_path\&o/yes-ld_run_path\&o/use-ld_run_path\&o/enable-ld_run_path\&o/with-ld_run_path\&o/no-ld_run_path\&o/not-ld_run_path\&o/disable-ld_run_path\&o/without-ld_run_path\&o/show-debug\&o/yes-show-debug\&o/use-show-debug\&o/enable-show-debug\&o/with-show-debug\&o/no-show-debug\&o/not-show-debug\&o/disable-show-debug\&o/without-show-debug\&o/append-paths\&o/yes-append-paths\&o/use-append-paths\&o/enable-append-paths\&o/with-append-paths\&o/no-append-paths\&o/not-append-paths\&o/disable-append-paths\&o/without-append-paths\&o/library_path\&o/yes-library_path\&o/use-library_path\&o/enable-library_path\&o/with-library_path\&o/no-library_path\&o/not-library_path\&o/disable-library_path\&o/without-library_path\&o/packaged-envvars\&o/yes-packaged-envvars\&o/use-packaged-envvars\&o/enable-packaged-envvars\&o/with-packaged-envvars\&o/no-packaged-envvars\&o/not-packaged-envvars\&o/disable-packaged-envvars\&o/without-packaged-envvars:openmpi/4.1.0\&mpi\&lam\&mpich\&openmpi\&intel-mpi\&o/wrappers\&o/yes-wrappers\&o/use-wrappers\&o/enable-wrappers\&o/with-wrappers\&o/no-wrappers\&o/not-wrappers\&o/disable-wrappers\&o/without-wrappers\&o/ld_library_path\&o/yes-ld_library_path\&o/use-ld_library_path\&o/enable-ld_library_path\&o/with-ld_library_path\&o/no-ld_library_path\&o/not-ld_library_path\&o/disable-ld_library_path\&o/without-ld_library_path\&o/ld_run_path\&o/yes-ld_run_path\&o/use-ld_run_path\&o/enable-ld_run_path\&o/with-ld_run_path\&o/no-ld_run_path\&o/not-ld_run_path\&o/disable-ld_run_path\&o/without-ld_run_path\&o/show-debug\&o/yes-show-debug\&o/use-show-debug\&o/enable-show-debug\&o/with-show-debug\&o/no-show-debug\&o/not-show-debug\&o/disable-show-debug\&o/without-show-debug\&o/append-paths\&o/yes-append-paths\&o/use-append-paths\&o/enable-append-paths\&o/with-append-paths\&o/no-append-paths\&o/not-append-paths\&o/disable-append-paths\&o/without-append-paths\&o/library_path\&o/yes-library_path\&o/use-library_path\&o/enable-library_path\&o/with-library_path\&o/no-library_path\&o/not-library_path\&o/disable-library_path\&o/without-library_path\&o/packaged-envvars\&o/yes-packaged-envvars\&o/use-packaged-envvars\&o/enable-packaged-envvars\&o/with-packaged-envvars\&o/no-packaged-envvars\&o/not-packaged-envvars\&o/disable-packaged-envvars\&o/without-packaged-envvars;' export 'MODULES_LMCONFLICT;
OPENMPI_ROOT=/apps/openmpi/4.1.0;' export 'OPENMPI_ROOT;
MANPATH_modshare=/apps/intel-ct/2021.1.1/compiler/documentation/en/man/common:1::1:/apps/netcdf/4.7.4/share/man:1:/apps/openmpi/4.1.0/share/man:1:/opt/pbs/default/share/man:1;' export 'MANPATH_modshare;
LIBRARY_PATH_modshare=/apps/openmpi/4.1.0/lib:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:1:/apps/openmpi/4.1.0/lib/profilers:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:1:/apps/netcdf/4.7.4/lib:1:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib:1;' export 'LIBRARY_PATH_modshare;
FPATH=/apps/openmpi/4.1.0/include:/apps/netcdf/4.7.4/include:/apps/intel-ct/2021.1.1/compiler/linux/include:/opt/Modules/v4.3.0/init/ksh-functions;' export 'FPATH;
C_INCLUDE_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1:/apps/openmpi/4.1.0/include:1:/apps/netcdf/4.7.4/include:1;' export 'C_INCLUDE_PATH_modshare;
MODULES_LMCONFLICT_modshare=openmpi/4.1.0\&mpi\&lam\&mpich\&openmpi\&intel-mpi\&o/wrappers\&o/yes-wrappers\&o/use-wrappers\&o/enable-wrappers\&o/with-wrappers\&o/no-wrappers\&o/not-wrappers\&o/disable-wrappers\&o/without-wrappers\&o/ld_library_path\&o/yes-ld_library_path\&o/use-ld_library_path\&o/enable-ld_library_path\&o/with-ld_library_path\&o/no-ld_library_path\&o/not-ld_library_path\&o/disable-ld_library_path\&o/without-ld_library_path\&o/ld_run_path\&o/yes-ld_run_path\&o/use-ld_run_path\&o/enable-ld_run_path\&o/with-ld_run_path\&o/no-ld_run_path\&o/not-ld_run_path\&o/disable-ld_run_path\&o/without-ld_run_path\&o/show-debug\&o/yes-show-debug\&o/use-show-debug\&o/enable-show-debug\&o/with-show-debug\&o/no-show-debug\&o/not-show-debug\&o/disable-show-debug\&o/without-show-debug\&o/append-paths\&o/yes-append-paths\&o/use-append-paths\&o/enable-append-paths\&o/with-append-paths\&o/no-append-paths\&o/not-append-paths\&o/disable-append-paths\&o/without-append-paths\&o/library_path\&o/yes-library_path\&o/use-library_path\&o/enable-library_path\&o/with-library_path\&o/no-library_path\&o/not-library_path\&o/disable-library_path\&o/without-library_path\&o/packaged-envvars\&o/yes-packaged-envvars\&o/use-packaged-envvars\&o/enable-packaged-envvars\&o/with-packaged-envvars\&o/no-packaged-envvars\&o/not-packaged-envvars\&o/disable-packaged-envvars\&o/without-packaged-envvars:1:intel-compiler/2021.1.1\&intel-compiler\&o/wrappers\&o/yes-wrappers\&o/use-wrappers\&o/enable-wrappers\&o/with-wrappers\&o/no-wrappers\&o/not-wrappers\&o/disable-wrappers\&o/without-wrappers\&o/ld_library_path\&o/yes-ld_library_path\&o/use-ld_library_path\&o/enable-ld_library_path\&o/with-ld_library_path\&o/no-ld_library_path\&o/not-ld_library_path\&o/disable-ld_library_path\&o/without-ld_library_path\&o/ld_run_path\&o/yes-ld_run_path\&o/use-ld_run_path\&o/enable-ld_run_path\&o/with-ld_run_path\&o/no-ld_run_path\&o/not-ld_run_path\&o/disable-ld_run_path\&o/without-ld_run_path\&o/show-debug\&o/yes-show-debug\&o/use-show-debug\&o/enable-show-debug\&o/with-show-debug\&o/no-show-debug\&o/not-show-debug\&o/disable-show-debug\&o/without-show-debug\&o/append-paths\&o/yes-append-paths\&o/use-append-paths\&o/enable-append-paths\&o/with-append-paths\&o/no-append-paths\&o/not-append-paths\&o/disable-append-paths\&o/without-append-paths\&o/library_path\&o/yes-library_path\&o/use-library_path\&o/enable-library_path\&o/with-library_path\&o/no-library_path\&o/not-library_path\&o/disable-library_path\&o/without-library_path\&o/packaged-envvars\&o/yes-packaged-envvars\&o/use-packaged-envvars\&o/enable-packaged-envvars\&o/with-packaged-envvars\&o/no-packaged-envvars\&o/not-packaged-envvars\&o/disable-packaged-envvars\&o/without-packaged-envvars:1:netcdf/4.7.4\&netcdf\&o/ld_library_path\&o/yes-ld_library_path\&o/use-ld_library_path\&o/enable-ld_library_path\&o/with-ld_library_path\&o/no-ld_library_path\&o/not-ld_library_path\&o/disable-ld_library_path\&o/without-ld_library_path\&o/ld_run_path\&o/yes-ld_run_path\&o/use-ld_run_path\&o/enable-ld_run_path\&o/with-ld_run_path\&o/no-ld_run_path\&o/not-ld_run_path\&o/disable-ld_run_path\&o/without-ld_run_path\&o/show-debug\&o/yes-show-debug\&o/use-show-debug\&o/enable-show-debug\&o/with-show-debug\&o/no-show-debug\&o/not-show-debug\&o/disable-show-debug\&o/without-show-debug\&o/append-paths\&o/yes-append-paths\&o/use-append-paths\&o/enable-append-paths\&o/with-append-paths\&o/no-append-paths\&o/not-append-paths\&o/disable-append-paths\&o/without-append-paths\&o/library_path\&o/yes-library_path\&o/use-library_path\&o/enable-library_path\&o/with-library_path\&o/no-library_path\&o/not-library_path\&o/disable-library_path\&o/without-library_path\&o/packaged-envvars\&o/yes-packaged-envvars\&o/use-packaged-envvars\&o/enable-packaged-envvars\&o/with-packaged-envvars\&o/no-packaged-envvars\&o/not-packaged-envvars\&o/disable-packaged-envvars\&o/without-packaged-envvars:1;' export 'MODULES_LMCONFLICT_modshare;
FPATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1:/opt/Modules/v4.3.0/init/ksh-functions:1:/apps/openmpi/4.1.0/include:1:/apps/netcdf/4.7.4/include:1;' export 'FPATH_modshare;
CPLUS_INCLUDE_PATH=/apps/openmpi/4.1.0/include:/apps/netcdf/4.7.4/include:/apps/intel-ct/2021.1.1/compiler/linux/include;' export 'CPLUS_INCLUDE_PATH;
OMPI_BASE=/apps/openmpi/4.1.0;' export 'OMPI_BASE;
OMPI_MCA_orte_tmpdir_base=/jobfs/98812898.gadi-pbs;' export 'OMPI_MCA_orte_tmpdir_base;
OPENMPI_BASE=/apps/openmpi/4.1.0;' export 'OPENMPI_BASE;
LD_RUN_PATH_modshare=/apps/openmpi/4.1.0/lib:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:1:/apps/openmpi/4.1.0/lib/profilers:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:1:/apps/netcdf/4.7.4/lib:1:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib:1;' export 'LD_RUN_PATH_modshare;
LD_LIBRARY_PATH_modshare=/apps/openmpi/4.1.0/lib:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:1:/apps/openmpi/4.1.0/lib/profilers:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:1:/apps/netcdf/4.7.4/lib:1:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib:1;' export 'LD_LIBRARY_PATH_modshare;
CPATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1:/apps/openmpi/4.1.0/include:1:/apps/netcdf/4.7.4/include:1;' export 'CPATH_modshare;
C_INCLUDE_PATH=/apps/openmpi/4.1.0/include:/apps/netcdf/4.7.4/include:/apps/intel-ct/2021.1.1/compiler/linux/include;' export 'C_INCLUDE_PATH;
_LMFILES__modshare=/apps/Modules/modulefiles/intel-compiler/2021.1.1:1:/apps/Modules/modulefiles/netcdf/4.7.4:1:/apps/Modules/modulefiles/openmpi/4.1.0:1;' export '_LMFILES__modshare;
LOADEDMODULES_modshare=openmpi/4.1.0:1:intel-compiler/2021.1.1:1:netcdf/4.7.4:1;' export 'LOADEDMODULES_modshare;
OPENMPI_VERSION=4.1.0;' export 'OPENMPI_VERSION;
PATH=/apps/openmpi/wrapper/fortran:/apps/openmpi/wrapper:/apps/openmpi/4.1.0/bin:/apps/netcdf/4.7.4/bin:/apps/intel-ct/wrapper:/apps/intel-ct/2021.1.1/compiler/linux/bin/intel64:/apps/intel-ct/2021.1.1/compiler/linux/bin:/home/581/bjs581/work/nci_tools:/scratch/rp23/bjs581/miniconda3/bin:/scratch/rp23/bjs581/miniconda3/condabin:/opt/pbs/default/bin:/opt/nci/bin:/opt/bin:/opt/Modules/v4.3.0/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin;' export 'PATH;
HCOLL_ENABLE_MCAST=0;' export 'HCOLL_ENABLE_MCAST;
VT_PFORM_LDIR=/jobfs/98812898.gadi-pbs;' export 'VT_PFORM_LDIR;
PATH_modshare=/apps/netcdf/4.7.4/bin:1:/usr/bin:1:/opt/Modules/v4.3.0/bin:1:/apps/intel-ct/wrapper:1:/apps/intel-ct/2021.1.1/compiler/linux/bin/intel64:1:/scratch/rp23/bjs581/miniconda3/condabin:1:/opt/bin:1:/bin:1:/apps/openmpi/wrapper:1:/apps/openmpi/4.1.0/bin:1:/opt/pbs/default/bin:1:/opt/nci/bin:1:/home/581/bjs581/work/nci_tools:1:/usr/sbin:1:/apps/openmpi/wrapper/fortran:1:/scratch/rp23/bjs581/miniconda3/bin:1:/apps/intel-ct/2021.1.1/compiler/linux/bin:1:/usr/local/sbin:1;' export 'PATH_modshare;
test' '0;'
++ LD_RUN_PATH=/apps/openmpi/4.1.0/lib:/apps/openmpi/4.1.0/lib/profilers:/apps/netcdf/4.7.4/lib:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:/apps/intel-ct/2021.1.1/compiler/linux/lib
++ export LD_RUN_PATH
++ LD_LIBRARY_PATH=/apps/openmpi/4.1.0/lib:/apps/openmpi/4.1.0/lib/profilers:/apps/netcdf/4.7.4/lib:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:/apps/intel-ct/2021.1.1/compiler/linux/lib
++ export LD_LIBRARY_PATH
++ CPATH=/apps/openmpi/4.1.0/include:/apps/netcdf/4.7.4/include:/apps/intel-ct/2021.1.1/compiler/linux/include
++ export CPATH
++ CPLUS_INCLUDE_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1:/apps/openmpi/4.1.0/include:1:/apps/netcdf/4.7.4/include:1
++ export CPLUS_INCLUDE_PATH_modshare
++ OMPI_ROOT=/apps/openmpi/4.1.0
++ export OMPI_ROOT
++ VT_MAX_FLUSHES=0
++ export VT_MAX_FLUSHES
++ MANPATH=/apps/openmpi/4.1.0/share/man:/apps/netcdf/4.7.4/share/man:/apps/intel-ct/2021.1.1/compiler/documentation/en/man/common:/opt/pbs/default/share/man::
++ export MANPATH
++ LIBRARY_PATH=/apps/openmpi/4.1.0/lib:/apps/openmpi/4.1.0/lib/profilers:/apps/netcdf/4.7.4/lib:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:/apps/intel-ct/2021.1.1/compiler/linux/lib
++ export LIBRARY_PATH
++ _LMFILES_=/apps/Modules/modulefiles/intel-compiler/2021.1.1:/apps/Modules/modulefiles/netcdf/4.7.4:/apps/Modules/modulefiles/openmpi/4.1.0
++ export _LMFILES_
++ LOADEDMODULES=intel-compiler/2021.1.1:netcdf/4.7.4:openmpi/4.1.0
++ export LOADEDMODULES
++ OMPI_VERSION=4.1.0
++ export OMPI_VERSION
++ MODULES_LMCONFLICT='intel-compiler/2021.1.1&intel-compiler&o/wrappers&o/yes-wrappers&o/use-wrappers&o/enable-wrappers&o/with-wrappers&o/no-wrappers&o/not-wrappers&o/disable-wrappers&o/without-wrappers&o/ld_library_path&o/yes-ld_library_path&o/use-ld_library_path&o/enable-ld_library_path&o/with-ld_library_path&o/no-ld_library_path&o/not-ld_library_path&o/disable-ld_library_path&o/without-ld_library_path&o/ld_run_path&o/yes-ld_run_path&o/use-ld_run_path&o/enable-ld_run_path&o/with-ld_run_path&o/no-ld_run_path&o/not-ld_run_path&o/disable-ld_run_path&o/without-ld_run_path&o/show-debug&o/yes-show-debug&o/use-show-debug&o/enable-show-debug&o/with-show-debug&o/no-show-debug&o/not-show-debug&o/disable-show-debug&o/without-show-debug&o/append-paths&o/yes-append-paths&o/use-append-paths&o/enable-append-paths&o/with-append-paths&o/no-append-paths&o/not-append-paths&o/disable-append-paths&o/without-append-paths&o/library_path&o/yes-library_path&o/use-library_path&o/enable-library_path&o/with-library_path&o/no-library_path&o/not-library_path&o/disable-library_path&o/without-library_path&o/packaged-envvars&o/yes-packaged-envvars&o/use-packaged-envvars&o/enable-packaged-envvars&o/with-packaged-envvars&o/no-packaged-envvars&o/not-packaged-envvars&o/disable-packaged-envvars&o/without-packaged-envvars:netcdf/4.7.4&netcdf&o/ld_library_path&o/yes-ld_library_path&o/use-ld_library_path&o/enable-ld_library_path&o/with-ld_library_path&o/no-ld_library_path&o/not-ld_library_path&o/disable-ld_library_path&o/without-ld_library_path&o/ld_run_path&o/yes-ld_run_path&o/use-ld_run_path&o/enable-ld_run_path&o/with-ld_run_path&o/no-ld_run_path&o/not-ld_run_path&o/disable-ld_run_path&o/without-ld_run_path&o/show-debug&o/yes-show-debug&o/use-show-debug&o/enable-show-debug&o/with-show-debug&o/no-show-debug&o/not-show-debug&o/disable-show-debug&o/without-show-debug&o/append-paths&o/yes-append-paths&o/use-append-paths&o/enable-append-paths&o/with-append-paths&o/no-append-paths&o/not-append-paths&o/disable-append-paths&o/without-append-paths&o/library_path&o/yes-library_path&o/use-library_path&o/enable-library_path&o/with-library_path&o/no-library_path&o/not-library_path&o/disable-library_path&o/without-library_path&o/packaged-envvars&o/yes-packaged-envvars&o/use-packaged-envvars&o/enable-packaged-envvars&o/with-packaged-envvars&o/no-packaged-envvars&o/not-packaged-envvars&o/disable-packaged-envvars&o/without-packaged-envvars:openmpi/4.1.0&mpi&lam&mpich&openmpi&intel-mpi&o/wrappers&o/yes-wrappers&o/use-wrappers&o/enable-wrappers&o/with-wrappers&o/no-wrappers&o/not-wrappers&o/disable-wrappers&o/without-wrappers&o/ld_library_path&o/yes-ld_library_path&o/use-ld_library_path&o/enable-ld_library_path&o/with-ld_library_path&o/no-ld_library_path&o/not-ld_library_path&o/disable-ld_library_path&o/without-ld_library_path&o/ld_run_path&o/yes-ld_run_path&o/use-ld_run_path&o/enable-ld_run_path&o/with-ld_run_path&o/no-ld_run_path&o/not-ld_run_path&o/disable-ld_run_path&o/without-ld_run_path&o/show-debug&o/yes-show-debug&o/use-show-debug&o/enable-show-debug&o/with-show-debug&o/no-show-debug&o/not-show-debug&o/disable-show-debug&o/without-show-debug&o/append-paths&o/yes-append-paths&o/use-append-paths&o/enable-append-paths&o/with-append-paths&o/no-append-paths&o/not-append-paths&o/disable-append-paths&o/without-append-paths&o/library_path&o/yes-library_path&o/use-library_path&o/enable-library_path&o/with-library_path&o/no-library_path&o/not-library_path&o/disable-library_path&o/without-library_path&o/packaged-envvars&o/yes-packaged-envvars&o/use-packaged-envvars&o/enable-packaged-envvars&o/with-packaged-envvars&o/no-packaged-envvars&o/not-packaged-envvars&o/disable-packaged-envvars&o/without-packaged-envvars'
++ export MODULES_LMCONFLICT
++ OPENMPI_ROOT=/apps/openmpi/4.1.0
++ export OPENMPI_ROOT
++ MANPATH_modshare=/apps/intel-ct/2021.1.1/compiler/documentation/en/man/common:1::1:/apps/netcdf/4.7.4/share/man:1:/apps/openmpi/4.1.0/share/man:1:/opt/pbs/default/share/man:1
++ export MANPATH_modshare
++ LIBRARY_PATH_modshare=/apps/openmpi/4.1.0/lib:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:1:/apps/openmpi/4.1.0/lib/profilers:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:1:/apps/netcdf/4.7.4/lib:1:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib:1
++ export LIBRARY_PATH_modshare
++ FPATH=/apps/openmpi/4.1.0/include:/apps/netcdf/4.7.4/include:/apps/intel-ct/2021.1.1/compiler/linux/include:/opt/Modules/v4.3.0/init/ksh-functions
++ export FPATH
++ C_INCLUDE_PATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1:/apps/openmpi/4.1.0/include:1:/apps/netcdf/4.7.4/include:1
++ export C_INCLUDE_PATH_modshare
++ MODULES_LMCONFLICT_modshare='openmpi/4.1.0&mpi&lam&mpich&openmpi&intel-mpi&o/wrappers&o/yes-wrappers&o/use-wrappers&o/enable-wrappers&o/with-wrappers&o/no-wrappers&o/not-wrappers&o/disable-wrappers&o/without-wrappers&o/ld_library_path&o/yes-ld_library_path&o/use-ld_library_path&o/enable-ld_library_path&o/with-ld_library_path&o/no-ld_library_path&o/not-ld_library_path&o/disable-ld_library_path&o/without-ld_library_path&o/ld_run_path&o/yes-ld_run_path&o/use-ld_run_path&o/enable-ld_run_path&o/with-ld_run_path&o/no-ld_run_path&o/not-ld_run_path&o/disable-ld_run_path&o/without-ld_run_path&o/show-debug&o/yes-show-debug&o/use-show-debug&o/enable-show-debug&o/with-show-debug&o/no-show-debug&o/not-show-debug&o/disable-show-debug&o/without-show-debug&o/append-paths&o/yes-append-paths&o/use-append-paths&o/enable-append-paths&o/with-append-paths&o/no-append-paths&o/not-append-paths&o/disable-append-paths&o/without-append-paths&o/library_path&o/yes-library_path&o/use-library_path&o/enable-library_path&o/with-library_path&o/no-library_path&o/not-library_path&o/disable-library_path&o/without-library_path&o/packaged-envvars&o/yes-packaged-envvars&o/use-packaged-envvars&o/enable-packaged-envvars&o/with-packaged-envvars&o/no-packaged-envvars&o/not-packaged-envvars&o/disable-packaged-envvars&o/without-packaged-envvars:1:intel-compiler/2021.1.1&intel-compiler&o/wrappers&o/yes-wrappers&o/use-wrappers&o/enable-wrappers&o/with-wrappers&o/no-wrappers&o/not-wrappers&o/disable-wrappers&o/without-wrappers&o/ld_library_path&o/yes-ld_library_path&o/use-ld_library_path&o/enable-ld_library_path&o/with-ld_library_path&o/no-ld_library_path&o/not-ld_library_path&o/disable-ld_library_path&o/without-ld_library_path&o/ld_run_path&o/yes-ld_run_path&o/use-ld_run_path&o/enable-ld_run_path&o/with-ld_run_path&o/no-ld_run_path&o/not-ld_run_path&o/disable-ld_run_path&o/without-ld_run_path&o/show-debug&o/yes-show-debug&o/use-show-debug&o/enable-show-debug&o/with-show-debug&o/no-show-debug&o/not-show-debug&o/disable-show-debug&o/without-show-debug&o/append-paths&o/yes-append-paths&o/use-append-paths&o/enable-append-paths&o/with-append-paths&o/no-append-paths&o/not-append-paths&o/disable-append-paths&o/without-append-paths&o/library_path&o/yes-library_path&o/use-library_path&o/enable-library_path&o/with-library_path&o/no-library_path&o/not-library_path&o/disable-library_path&o/without-library_path&o/packaged-envvars&o/yes-packaged-envvars&o/use-packaged-envvars&o/enable-packaged-envvars&o/with-packaged-envvars&o/no-packaged-envvars&o/not-packaged-envvars&o/disable-packaged-envvars&o/without-packaged-envvars:1:netcdf/4.7.4&netcdf&o/ld_library_path&o/yes-ld_library_path&o/use-ld_library_path&o/enable-ld_library_path&o/with-ld_library_path&o/no-ld_library_path&o/not-ld_library_path&o/disable-ld_library_path&o/without-ld_library_path&o/ld_run_path&o/yes-ld_run_path&o/use-ld_run_path&o/enable-ld_run_path&o/with-ld_run_path&o/no-ld_run_path&o/not-ld_run_path&o/disable-ld_run_path&o/without-ld_run_path&o/show-debug&o/yes-show-debug&o/use-show-debug&o/enable-show-debug&o/with-show-debug&o/no-show-debug&o/not-show-debug&o/disable-show-debug&o/without-show-debug&o/append-paths&o/yes-append-paths&o/use-append-paths&o/enable-append-paths&o/with-append-paths&o/no-append-paths&o/not-append-paths&o/disable-append-paths&o/without-append-paths&o/library_path&o/yes-library_path&o/use-library_path&o/enable-library_path&o/with-library_path&o/no-library_path&o/not-library_path&o/disable-library_path&o/without-library_path&o/packaged-envvars&o/yes-packaged-envvars&o/use-packaged-envvars&o/enable-packaged-envvars&o/with-packaged-envvars&o/no-packaged-envvars&o/not-packaged-envvars&o/disable-packaged-envvars&o/without-packaged-envvars:1'
++ export MODULES_LMCONFLICT_modshare
++ FPATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1:/opt/Modules/v4.3.0/init/ksh-functions:1:/apps/openmpi/4.1.0/include:1:/apps/netcdf/4.7.4/include:1
++ export FPATH_modshare
++ CPLUS_INCLUDE_PATH=/apps/openmpi/4.1.0/include:/apps/netcdf/4.7.4/include:/apps/intel-ct/2021.1.1/compiler/linux/include
++ export CPLUS_INCLUDE_PATH
++ OMPI_BASE=/apps/openmpi/4.1.0
++ export OMPI_BASE
++ OMPI_MCA_orte_tmpdir_base=/jobfs/98812898.gadi-pbs
++ export OMPI_MCA_orte_tmpdir_base
++ OPENMPI_BASE=/apps/openmpi/4.1.0
++ export OPENMPI_BASE
++ LD_RUN_PATH_modshare=/apps/openmpi/4.1.0/lib:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:1:/apps/openmpi/4.1.0/lib/profilers:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:1:/apps/netcdf/4.7.4/lib:1:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib:1
++ export LD_RUN_PATH_modshare
++ LD_LIBRARY_PATH_modshare=/apps/openmpi/4.1.0/lib:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/x64:1:/apps/openmpi/4.1.0/lib/profilers:1:/apps/intel-ct/2021.1.1/compiler/linux/lib/emu:1:/apps/netcdf/4.7.4/lib:1:/apps/intel-ct/2021.1.1/compiler/linux/compiler/lib/intel64:1:/apps/intel-ct/2021.1.1/compiler/linux/lib:1
++ export LD_LIBRARY_PATH_modshare
++ CPATH_modshare=/apps/intel-ct/2021.1.1/compiler/linux/include:1:/apps/openmpi/4.1.0/include:1:/apps/netcdf/4.7.4/include:1
++ export CPATH_modshare
++ C_INCLUDE_PATH=/apps/openmpi/4.1.0/include:/apps/netcdf/4.7.4/include:/apps/intel-ct/2021.1.1/compiler/linux/include
++ export C_INCLUDE_PATH
++ _LMFILES__modshare=/apps/Modules/modulefiles/intel-compiler/2021.1.1:1:/apps/Modules/modulefiles/netcdf/4.7.4:1:/apps/Modules/modulefiles/openmpi/4.1.0:1
++ export _LMFILES__modshare
++ LOADEDMODULES_modshare=openmpi/4.1.0:1:intel-compiler/2021.1.1:1:netcdf/4.7.4:1
++ export LOADEDMODULES_modshare
++ OPENMPI_VERSION=4.1.0
++ export OPENMPI_VERSION
++ PATH=/apps/openmpi/wrapper/fortran:/apps/openmpi/wrapper:/apps/openmpi/4.1.0/bin:/apps/netcdf/4.7.4/bin:/apps/intel-ct/wrapper:/apps/intel-ct/2021.1.1/compiler/linux/bin/intel64:/apps/intel-ct/2021.1.1/compiler/linux/bin:/home/581/bjs581/work/nci_tools:/scratch/rp23/bjs581/miniconda3/bin:/scratch/rp23/bjs581/miniconda3/condabin:/opt/pbs/default/bin:/opt/nci/bin:/opt/bin:/opt/Modules/v4.3.0/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin
++ export PATH
++ HCOLL_ENABLE_MCAST=0
++ export HCOLL_ENABLE_MCAST
++ VT_PFORM_LDIR=/jobfs/98812898.gadi-pbs
++ export VT_PFORM_LDIR
++ PATH_modshare=/apps/netcdf/4.7.4/bin:1:/usr/bin:1:/opt/Modules/v4.3.0/bin:1:/apps/intel-ct/wrapper:1:/apps/intel-ct/2021.1.1/compiler/linux/bin/intel64:1:/scratch/rp23/bjs581/miniconda3/condabin:1:/opt/bin:1:/bin:1:/apps/openmpi/wrapper:1:/apps/openmpi/4.1.0/bin:1:/opt/pbs/default/bin:1:/opt/nci/bin:1:/home/581/bjs581/work/nci_tools:1:/usr/sbin:1:/apps/openmpi/wrapper/fortran:1:/scratch/rp23/bjs581/miniconda3/bin:1:/apps/intel-ct/2021.1.1/compiler/linux/bin:1:/usr/local/sbin:1
++ export PATH_modshare
++ test 0
+ _mlstatus=0
+ '[' -n x ']'
+ IFS='     
'
+ unset _mlre _mlv _mlrv _mlIFS
+ '[' -n '' ']'
+ unset _mlshdbg
+ return 0
+ /scratch/rp23/bjs581/miniconda3/envs/benchcab-dev/bin/benchcab fluxsite-run-tasks --config=config.yaml -v
Running fluxsite tasks...
Running task AU-Tum_2002-2017_OzFlux_Met_R1_S3... CABLE standard output saved in /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/tasks/AU-Tum_2002-2017_OzFlux_Met_R1_S3/out.txt
./cable cable.nml
Adding attributes to output file: /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/outputs/AU-Tum_2002-2017_OzFlux_Met_R1_S3_out.nc
Running task AU-Tum_2002-2017_OzFlux_Met_R1_S2... CABLE standard output saved in /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/tasks/AU-Tum_2002-2017_OzFlux_Met_R1_S2/out.txt
./cable cable.nml
Adding attributes to output file: /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/outputs/AU-Tum_2002-2017_OzFlux_Met_R1_S2_out.nc
Running task AU-Tum_2002-2017_OzFlux_Met_R0_S2... CABLE standard output saved in /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/tasks/AU-Tum_2002-2017_OzFlux_Met_R0_S2/out.txt
./cable cable.nml
Adding attributes to output file: /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/outputs/AU-Tum_2002-2017_OzFlux_Met_R0_S2_out.nc
Running task AU-Tum_2002-2017_OzFlux_Met_R1_S0... CABLE standard output saved in /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/tasks/AU-Tum_2002-2017_OzFlux_Met_R1_S0/out.txt
./cable cable.nml
Adding attributes to output file: /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/outputs/AU-Tum_2002-2017_OzFlux_Met_R1_S0_out.nc
Running task AU-Tum_2002-2017_OzFlux_Met_R0_S0... CABLE standard output saved in /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/tasks/AU-Tum_2002-2017_OzFlux_Met_R0_S0/out.txt
./cable cable.nml
Adding attributes to output file: /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/outputs/AU-Tum_2002-2017_OzFlux_Met_R0_S0_out.nc
Running task AU-Tum_2002-2017_OzFlux_Met_R0_S1... CABLE standard output saved in /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/tasks/AU-Tum_2002-2017_OzFlux_Met_R0_S1/out.txt
./cable cable.nml
Adding attributes to output file: /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/outputs/AU-Tum_2002-2017_OzFlux_Met_R0_S1_out.nc
Running task AU-Tum_2002-2017_OzFlux_Met_R1_S1... CABLE standard output saved in /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/tasks/AU-Tum_2002-2017_OzFlux_Met_R1_S1/out.txt
./cable cable.nml
Adding attributes to output file: /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/outputs/AU-Tum_2002-2017_OzFlux_Met_R1_S1_out.nc
Running task AU-Tum_2002-2017_OzFlux_Met_R0_S3... CABLE standard output saved in /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/tasks/AU-Tum_2002-2017_OzFlux_Met_R0_S3/out.txt
./cable cable.nml
Adding attributes to output file: /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/outputs/AU-Tum_2002-2017_OzFlux_Met_R0_S3_out.nc
Successfully ran fluxsite tasks

+ /scratch/rp23/bjs581/miniconda3/envs/benchcab-dev/bin/benchcab fluxsite-bitwise-cmp --config=config.yaml -v
Running comparison tasks...
Comparing files AU-Tum_2002-2017_OzFlux_Met_R0_S0_out.nc and AU-Tum_2002-2017_OzFlux_Met_R1_S0_out.nc bitwise...
nccmp -df /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/outputs/AU-Tum_2002-2017_OzFlux_Met_R0_S0_out.nc /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/outputs/AU-Tum_2002-2017_OzFlux_Met_R1_S0_out.nc
Success: files AU-Tum_2002-2017_OzFlux_Met_R0_S0_out.nc AU-Tum_2002-2017_OzFlux_Met_R1_S0_out.nc are identical
Comparing files AU-Tum_2002-2017_OzFlux_Met_R0_S3_out.nc and AU-Tum_2002-2017_OzFlux_Met_R1_S3_out.nc bitwise...
nccmp -df /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/outputs/AU-Tum_2002-2017_OzFlux_Met_R0_S3_out.nc /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/outputs/AU-Tum_2002-2017_OzFlux_Met_R1_S3_out.nc
Success: files AU-Tum_2002-2017_OzFlux_Met_R0_S3_out.nc AU-Tum_2002-2017_OzFlux_Met_R1_S3_out.nc are identical
Comparing files AU-Tum_2002-2017_OzFlux_Met_R0_S2_out.nc and AU-Tum_2002-2017_OzFlux_Met_R1_S2_out.nc bitwise...
nccmp -df /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/outputs/AU-Tum_2002-2017_OzFlux_Met_R0_S2_out.nc /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/outputs/AU-Tum_2002-2017_OzFlux_Met_R1_S2_out.nc
Success: files AU-Tum_2002-2017_OzFlux_Met_R0_S2_out.nc AU-Tum_2002-2017_OzFlux_Met_R1_S2_out.nc are identical
Comparing files AU-Tum_2002-2017_OzFlux_Met_R0_S1_out.nc and AU-Tum_2002-2017_OzFlux_Met_R1_S1_out.nc bitwise...
nccmp -df /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/outputs/AU-Tum_2002-2017_OzFlux_Met_R0_S1_out.nc /scratch/rp23/bjs581/benchcab/integration/runs/fluxsite/outputs/AU-Tum_2002-2017_OzFlux_Met_R1_S1_out.nc
Success: files AU-Tum_2002-2017_OzFlux_Met_R0_S1_out.nc AU-Tum_2002-2017_OzFlux_Met_R1_S1_out.nc are identical
Successfully ran comparison tasks

======================================================================================
                  Resource Usage on 2023-10-24 12:04:15:
   Job Id:             98812898.gadi-pbs
   Project:            rp23
   Exit Status:        0
   Service Units:      1.12
   NCPUs Requested:    18                     NCPUs Used: 18              
                                           CPU Time Used: 00:11:33        
   Memory Requested:   30.0GB                Memory Used: 874.95MB        
   Walltime requested: 06:00:00            Walltime Used: 00:01:52        
   JobFS requested:    100.0MB                JobFS used: 0B              
======================================================================================
SeanBryan51 commented 1 year ago

Nice. I'll try run the integration test on Gadi. I suspect I'd have to replace rp23 with $PROJECT in integration.sh but I will let you know if I require other changes.