Can't change parameters from default

CAFS-bioinformatics / P_RNA_scaffolder

use paired-end transcriptome reads to scaffold genomes

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Can't change parameters from default #1

Open mglubber opened 5 years ago

mglubber commented 5 years ago

P_RNA_scaffolder.sh will always run with default parameters despite what options are passed. 'Accurate' mode is still used even if -b is set to 'no', and setting -t doesn't change how many instances of blat are run.