CAMI-challenge AMBER issues

CAMI-challenge / AMBER

AMBER: Assessment of Metagenome BinnERs

https://cami-challenge.github.io/AMBER/

GNU General Public License v3.0

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issues

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what are the differences among "recall_avg_bp", "recall_avg_bp_cami1", "recall_avg_bp_sem", "recall_avg_bp_sem_cami1"

#60 jiaojiaoguan closed 2 weeks ago
4
Old files archive are not correct

#58 SantaMcCloud opened 2 months ago
2
Bug which make the option genome_coverage not usable

#57 SantaMcCloud closed 3 months ago
1
bug fix such that the option [--genome_coverage] is usable again

#56 SantaMcCloud closed 3 months ago
3
Bump jinja2 from 3.1.2 to 3.1.3

#55 dependabot[bot] closed 4 months ago
1
mixed dtype for BINID can cause bins with same IDs to be split into separate bins

#54 mattheatley closed 3 months ago
2
Bump pyarrow from 11.0.0 to 14.0.1

#53 dependabot[bot] closed 4 months ago
1
Updates for AMBER requirements

#52 yazhinia closed 1 year ago
1
How does mapping work?

#51 yazhinia closed 1 year ago
4
Evaluating Gold standard encountered RuntimeWarning: overflow

#50 yazhinia closed 1 year ago
8
ImportError: cannot import name 'Markup' from 'jinja2'

#49 eparisis closed 1 year ago
2
Bump numpy from 1.18.3 to 1.22.0 in /requirements

#48 dependabot[bot] closed 4 months ago
1
gold standard mapping column BINID vs binning assignment file

#47 Paupiera closed 2 years ago
3
Other problem.

#46 zhang570221322 closed 3 years ago
2
a data-related problem

#45 Huangpq2019 closed 3 years ago
1
Issue when running add_length_column.py

#44 polinanvkv closed 4 years ago
2
amber only considers bins with completeness > 0 ?

#43 dpellow closed 4 years ago
1
Error creating html - character encoding

#42 dpellow closed 4 years ago
4
Error in creating html page

#41 rmenegaux closed 4 years ago
2
Question of the output

#40 psj1997 closed 4 years ago
3
"nan" values in Purity (bp) and Purity (seq)

#39 apcamargo closed 4 years ago
2
Output metrics bp vs seq.

#38 ohickl closed 4 years ago
2
Error creating genome binning plots

#37 ohickl closed 4 years ago
0
a question about AMBER 2.0.21-beta

#36 ziyewang closed 5 years ago
2
v2.0.17-beta TWO bugs

#35 Ash1One closed 5 years ago
4
Filter contigs by length

#34 abremges closed 6 years ago
3
use ensurepip

#33 graingert closed 6 years ago
3
configure wheels

#32 graingert closed 6 years ago
0
modernize pip instructions

#31 graingert closed 6 years ago
2
Improve error message(s)

#30 abremges closed 6 years ago
2
Add citation info

#29 abremges closed 6 years ago
2
set the long_description to readme

#28 graingert closed 4 months ago
0
use python gitignore

#27 graingert closed 6 years ago
0
rename to ambie, as that's available on PyPI fixes #25

#26 graingert closed 6 years ago
2
amber package name is already taken on PyPI. Please choose a different name

#25 graingert closed 6 years ago
2
fix(html): use correct color for heatmap

#24 pbelmann closed 7 years ago
0
avg precision vs avg recall per base pair

#23 pbelmann closed 7 years ago
0
Install amber with pip

#22 pbelmann closed 7 years ago
0
feature improved html

#21 pbelmann closed 7 years ago
0
fix(html): use different color scale for heatmap

#20 pbelmann closed 7 years ago
1
Feature colored columns

#19 pbelmann closed 7 years ago
0
Github.io Page

#18 pbelmann closed 7 years ago
0
feat(docker): tested docker image

#17 pbelmann closed 7 years ago
0
Feature/test docker

#16 pbelmann closed 7 years ago
0
CHANGELOG

#15 pbelmann opened 7 years ago
0
Create GitHub Page

#14 pbelmann closed 7 years ago
3
VERSION

#13 pbelmann closed 6 years ago
1
AMBER in Dockerhub

#12 pbelmann closed 7 years ago
0
colorized html table

#11 pbelmann closed 7 years ago
0
feat(html): add contamination completion table

#10 pbelmann closed 7 years ago
0