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CAMI-challenge / CAMISIM

CAMISIM: Simulating metagenomes and microbial communities
https://data.cami-challenge.org/participate
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[MetagenomeSimulationPipeline] Empty bam file list in line 106 #67

Closed chuanfuyap closed 5 years ago

chuanfuyap commented 5 years ago

Hi,

I am trying to run CAMISIM, in order to verify the tool works on my computer, I tried the two demo files mini.biom and mini_config.ini, using

python metagenome_from_profile.py -p defaults/mini.biom

and

python metagenomesimulation.py defaults/mini_config.ini

For both runs I stumble onto 'Empty bam file list in line 106' error.

from_profile

2019-09-18 16:42:27 WARNING: [root] Max strains per OTU not set, using default (3) 2019-09-18 16:42:27 WARNING: [root] Mu and sigma have not been set, using defaults (1,2) 2019-09-18 16:42:28 WARNING: [root] Some OTUs could not be mapped 2019-09-18 16:42:32 INFO: [MetagenomeSimulationPipeline] Metagenome simulation starting 2019-09-18 16:42:32 INFO: [MetagenomeSimulationPipeline] Validating Genomes 2019-09-18 16:42:32 INFO: [MetadataReader] Reading file: '/Users/user/Applications/CAMISIM/profile_demo_output/genome_to_id.tsv' ^C2019-09-18 16:42:33 ERROR: [MetagenomeSimulationPipeline] in line 49 2019-09-18 16:42:33 INFO: [MetagenomeSimulationPipeline] Metagenome simulation aborted (camisim) cfy-macbook:CAMISIM mbgppcy4$ python metagenome_from_profile.py -p defaults/mini.biom -o profile_demo_output 2019-09-18 16:42:40 WARNING: [root] Max strains per OTU not set, using default (3) 2019-09-18 16:42:40 WARNING: [root] Mu and sigma have not been set, using defaults (1,2) 2019-09-18 16:42:40 WARNING: [root] Some OTUs could not be mapped 2019-09-18 16:42:49 INFO: [MetagenomeSimulationPipeline] Metagenome simulation starting 2019-09-18 16:42:49 INFO: [MetagenomeSimulationPipeline] Validating Genomes 2019-09-18 16:42:49 INFO: [MetadataReader] Reading file: '/Users/user/Applications/CAMISIM/profile_demo_output/genome_to_id.tsv' 2019-09-18 16:42:54 INFO: [MetadataReader 64331874927] Reading file: '/Users/user/Applications/CAMISIM/profile_demo_output/metadata.tsv' 2019-09-18 16:42:54 INFO: [MetadataReader 21663007437] Reading file: '/Users/user/Applications/CAMISIM/profile_demo_output/internal/genomelocations.tsv' 2019-09-18 16:42:56 INFO: [NcbiTaxonomy] Building taxonomy tree... 2019-09-18 16:42:56 INFO: [NcbiTaxonomy] Reading 'nodes' file: '/var/folders/7/7_b77tdn1kdf7yhvl7sbg200000gp/T/tmptDx8wQ/NCBI/nodes.dmp' 2019-09-18 16:43:13 INFO: [NcbiTaxonomy] Reading 'names' file: '/var/folders/7/7_b77tdn1kdf7yhvl7sbg200000gp/T/tmptDx8wQ/NCBI/names.dmp' 2019-09-18 16:43:16 INFO: [NcbiTaxonomy] Reading 'merged' file: '/var/folders/7/7_b77tdn1kdf7yhv_l7sbg200000gp/T/tmptDx8wQ/NCBI/merged.dmp' 2019-09-18 16:43:16 INFO: [NcbiTaxonomy] Done (20.0s) 2019-09-18 16:43:16 INFO: [MetagenomeSimulationPipeline] Move Genomes 2019-09-18 16:43:16 INFO: [MetagenomeSimulationPipeline] Read simulation 2019-09-18 16:43:16 INFO: [GenomePreparation 6892657378] Using 'mbarc' error profile. 2019-09-18 16:43:16 INFO: [GenomePreparation 6892657378] Reading distribution file 2019-09-18 16:43:16 INFO: [GenomePreparation 6892657378] Reading genome location file 2019-09-18 16:43:22 INFO: [GenomePreparation 6892657378] Simulating reads using ReadSimulationArtIllumina readsimulator... 2019-09-18 16:43:22 INFO: [GenomePreparation 6892657378] Simulating reads from Genome1.0: '/Users/user/Applications/CAMISIM/profile_demo_output/source_genomes/GCA_000299475.1_ASM29947v1.fa' /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file 2019-09-18 16:43:22 ERROR: [GenomePreparation 6892657378] 1 commands returned errors! Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/profile_demo_output/source_genomes/GCA_000299475.1_ASM29947v1.fa' -l 150 -m 270 -s 27 -f 927.694042052 -o '/tmp/tmp0ITils/2019.09.18_16.42.49_sample_0/reads/Genome1.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4308541860249904406' 2019-09-18 16:43:22 INFO: [GenomePreparation 6892657378] Simulating reads finished 2019-09-18 16:43:22 INFO: [GenomePreparation 84586248763] Using 'mbarc' error profile. 2019-09-18 16:43:22 INFO: [GenomePreparation 84586248763] Reading distribution file 2019-09-18 16:43:22 INFO: [GenomePreparation 84586248763] Reading genome location file 2019-09-18 16:43:27 INFO: [GenomePreparation 84586248763] Simulating reads using ReadSimulationArtIllumina readsimulator... 2019-09-18 16:43:27 INFO: [GenomePreparation 84586248763] Simulating reads from Genome1.0: '/Users/user/Applications/CAMISIM/profile_demo_output/source_genomes/GCA_000299475.1_ASM29947v1.fa' 2019-09-18 16:43:27 INFO: [GenomePreparation 84586248763] Simulating reads from Genome2.0: '/Users/user/Applications/CAMISIM/profile_demo_output/source_genomes/GCA_000210475.1_ASM21047v1.fa' 2019-09-18 16:43:27 INFO: [GenomePreparation 84586248763] Simulating reads from Genome2.1: '/Users/user/Applications/CAMISIM/profile_demo_output/source_genomes/GCA_000299455.1_ASM29945v1.fa' /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file 2019-09-18 16:43:27 ERROR: [GenomePreparation 84586248763] 3 commands returned errors! Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/profile_demo_output/source_genomes/GCA_000299475.1_ASM29947v1.fa' -l 150 -m 270 -s 27 -f 373.265609768 -o '/tmp/tmp0ITils/2019.09.18_16.42.49_sample_1/reads/Genome1.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5505435803665486558' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/profile_demo_output/source_genomes/GCA_000210475.1_ASM21047v1.fa' -l 150 -m 270 -s 27 -f 503.844207748 -o '/tmp/tmp0ITils/2019.09.18_16.42.49_sample_1/reads/Genome2.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6734130014101221577' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/profile_demo_output/source_genomes/GCA_000299455.1_ASM29945v1.fa' -l 150 -m 270 -s 27 -f 56.0542069032 -o '/tmp/tmp0ITils/2019.09.18_16.42.49_sample_1/reads/Genome2.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6907498907136042131' 2019-09-18 16:43:27 INFO: [GenomePreparation 84586248763] Simulating reads finished 2019-09-18 16:43:28 INFO: [MetagenomeSimulationPipeline] Generate gold standard assembly 2019-09-18 16:43:28 INFO: [MetadataReader 28993512233] Reading file: '/Users/user/Applications/CAMISIM/profile_demo_output/internal/genome_locations.tsv' 2019-09-18 16:43:28 ERROR: [MetagenomeSimulationPipeline] Empty bam file list in line 106 2019-09-18 16:43:28 INFO: [MetagenomeSimulationPipeline] Metagenome simulation aborted

de novo

2019-09-18 16:45:14 INFO: [MetagenomeSimulationPipeline] Metagenome simulation starting 2019-09-18 16:45:14 INFO: [MetagenomeSimulationPipeline] Validating Genomes 2019-09-18 16:45:14 INFO: [MetadataReader] Reading file: '/Users/user/Applications/CAMISIM/defaults/genome_to_id.tsv' 2019-09-18 16:45:46 INFO: [MetagenomeSimulationPipeline] Design Communities 2019-09-18 16:45:46 INFO: [CommunityDesign] Drawing strains. 2019-09-18 16:45:46 INFO: [MetadataReader 82380310288] Reading file: '/Users/user/Applications/CAMISIM/defaults/metadata.tsv' 2019-09-18 16:45:46 INFO: [MetadataReader 28547833133] Reading file: '/Users/user/Applications/CAMISIM/defaults/genome_toid.tsv' 2019-09-18 16:45:46 INFO: [CommunityDesign] Validating raw sequence files! 2019-09-18 16:46:19 INFO: [NcbiTaxonomy] Building taxonomy tree... 2019-09-18 16:46:19 INFO: [NcbiTaxonomy] Reading 'nodes' file: '/var/folders/7/7_b77tdn1kdf7yhvl7sbg200000gp/T/tmpko4fOI/NCBI/nodes.dmp' 2019-09-18 16:46:38 INFO: [NcbiTaxonomy] Reading 'names' file: '/var/folders/7/7_b77tdn1kdf7yhvl7sbg200000gp/T/tmpko4fOI/NCBI/names.dmp' 2019-09-18 16:46:40 INFO: [NcbiTaxonomy] Reading 'merged' file: '/var/folders/7/7_b77tdn1kdf7yhv_l7sbg200000gp/T/tmpko4fOI/NCBI/merged.dmp' 2019-09-18 16:46:40 INFO: [NcbiTaxonomy] Done (21.0s) 2019-09-18 16:46:40 INFO: [MetagenomeSimulationPipeline] Move Genomes 2019-09-18 16:46:42 INFO: [MetagenomeSimulationPipeline] Read simulation 2019-09-18 16:46:42 INFO: [GenomePreparation 57786367802] Using 'mbarc' error profile. 2019-09-18 16:46:42 INFO: [GenomePreparation 57786367802] Reading distribution file 2019-09-18 16:46:42 INFO: [GenomePreparation 57786367802] Reading genome location file 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads using ReadSimulationArtIllumina readsimulator... 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome15.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000227705.3_ASM22770v3.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome14.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000006785.2_ASM678v2.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome11.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000255115.3_ASM25511v3.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome24.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000025905.1_ASM2590v1.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome12.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000231385.3_ASM23138v3.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome18.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000023785.1_ASM2378v1.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome17.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000242255.3_ASM24225v3.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome16.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000022345.1_ASM2234v1.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome19.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013785.1_ASM1378v1.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome2.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000445015.1_ASM44501v1.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome4.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001877055.1_ASM187705v1.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome4.1: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092985.1_ASM9298v1.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome5.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143845.1_ASM14384v1.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome3.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000265425.1_ASM26542v1.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome20.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000439255.1_ASM43925v1.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome6.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092825.1_ASM9282v1.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome23.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000235405.3_ASM23540v3.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome9.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013285.1_ASM1328v1.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome7.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000325705.1_ASM32570v1.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome13.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000233715.3_ASM23371v3.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome10.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001692755.1_ASM169275v1.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome10.1: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000015865.1_ASM1586v1.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome8.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092125.1_ASM9212v1.fa' 2019-09-18 16:47:15 INFO: [GenomePreparation 57786367802] Simulating reads from Genome22.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143985.1_ASM14398v1.fa' /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file 2019-09-18 16:47:16 ERROR: [GenomePreparation 57786367802] 24 commands returned errors! Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000227705.3_ASM22770v3.fa' -l 150 -m 270 -s 27 -f 0.142863129458 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome15.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4114942673337101054' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000006785.2_ASM678v2.fa' -l 150 -m 270 -s 27 -f 3.16877652537 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome14.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4201875260135821527' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000255115.3_ASM25511v3.fa' -l 150 -m 270 -s 27 -f 0.00282777504327 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome11.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '2163287706835983960' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000025905.1_ASM2590v1.fa' -l 150 -m 270 -s 27 -f 0.000858840889509 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome24.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3324737728971416590' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000231385.3_ASM23138v3.fa' -l 150 -m 270 -s 27 -f 1.97133447482 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome12.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1037540933870826142' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000023785.1_ASM2378v1.fa' -l 150 -m 270 -s 27 -f 0.359589504558 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome18.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5510961706801362981' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000242255.3_ASM24225v3.fa' -l 150 -m 270 -s 27 -f 0.00393366262632 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome17.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5611249972047222816' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000022345.1_ASM2234v1.fa' -l 150 -m 270 -s 27 -f 0.129002658155 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome16.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7399296172965161232' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013785.1_ASM1378v1.fa' -l 150 -m 270 -s 27 -f 0.0637857978349 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome19.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '857340346311307602' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000445015.1_ASM44501v1.fa' -l 150 -m 270 -s 27 -f 0.123598980172 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome2.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8535856233354800210' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001877055.1_ASM187705v1.fa' -l 150 -m 270 -s 27 -f 0.0701932087813 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome4.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8097346739665905250' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092985.1_ASM9298v1.fa' -l 150 -m 270 -s 27 -f 1.57510132272 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome4.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7613543737444416746' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143845.1_ASM14384v1.fa' -l 150 -m 270 -s 27 -f 0.00333325925837 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome5.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7237048947420835370' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000265425.1_ASM26542v1.fa' -l 150 -m 270 -s 27 -f 0.0130766546811 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome3.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7086616331793756913' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000439255.1_ASM43925v1.fa' -l 150 -m 270 -s 27 -f 7.88539807121 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome20.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7371411483896064160' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092825.1_ASM9282v1.fa' -l 150 -m 270 -s 27 -f 0.0295772953343 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome6.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3905539567789379985' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000235405.3_ASM23540v3.fa' -l 150 -m 270 -s 27 -f 5.64343812457 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome23.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '2148259712793037564' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013285.1_ASM1328v1.fa' -l 150 -m 270 -s 27 -f 0.849941167509 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome9.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6979659519100226908' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000325705.1_ASM32570v1.fa' -l 150 -m 270 -s 27 -f 0.0737184356702 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome7.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3541818579741237291' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000233715.3_ASM23371v3.fa' -l 150 -m 270 -s 27 -f 0.878580402598 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome13.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8163861598102444286' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001692755.1_ASM169275v1.fa' -l 150 -m 270 -s 27 -f 0.0416875437968 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome10.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6906223608476532580' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000015865.1_ASM1586v1.fa' -l 150 -m 270 -s 27 -f 0.488405833559 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome10.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1700519071244106008' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092125.1_ASM9212v1.fa' -l 150 -m 270 -s 27 -f 2.94337808593 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome8.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '73870965291664047' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143985.1_ASM14398v1.fa' -l 150 -m 270 -s 27 -f 0.0217378764185 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_0/reads/Genome22.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3013946107811684083' 2019-09-18 16:47:16 INFO: [GenomePreparation 57786367802] Simulating reads finished 2019-09-18 16:47:16 INFO: [GenomePreparation 6110572091] Using 'mbarc' error profile. 2019-09-18 16:47:16 INFO: [GenomePreparation 6110572091] Reading distribution file 2019-09-18 16:47:16 INFO: [GenomePreparation 6110572091] Reading genome location file 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads using ReadSimulationArtIllumina readsimulator... 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome15.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000227705.3_ASM22770v3.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome14.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000006785.2_ASM678v2.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome11.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000255115.3_ASM25511v3.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome24.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000025905.1_ASM2590v1.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome12.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000231385.3_ASM23138v3.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome18.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000023785.1_ASM2378v1.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome17.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000242255.3_ASM24225v3.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome16.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000022345.1_ASM2234v1.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome19.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013785.1_ASM1378v1.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome2.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000445015.1_ASM44501v1.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome4.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001877055.1_ASM187705v1.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome4.1: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092985.1_ASM9298v1.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome5.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143845.1_ASM14384v1.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome3.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000265425.1_ASM26542v1.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome20.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000439255.1_ASM43925v1.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome6.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092825.1_ASM9282v1.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome23.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000235405.3_ASM23540v3.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome9.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013285.1_ASM1328v1.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome7.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000325705.1_ASM32570v1.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome13.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000233715.3_ASM23371v3.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome10.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001692755.1_ASM169275v1.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome10.1: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000015865.1_ASM1586v1.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome8.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092125.1_ASM9212v1.fa' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads from Genome22.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143985.1_ASM14398v1.fa' /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file 2019-09-18 16:47:49 ERROR: [GenomePreparation 6110572091] 24 commands returned errors! Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000227705.3_ASM22770v3.fa' -l 150 -m 270 -s 27 -f 0.478394334398 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome15.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6079452890676340339' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000006785.2_ASM678v2.fa' -l 150 -m 270 -s 27 -f 0.843511582399 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome14.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '172619497213595270' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000255115.3_ASM25511v3.fa' -l 150 -m 270 -s 27 -f 0.434614635745 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome11.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6060336437942819834' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000025905.1_ASM2590v1.fa' -l 150 -m 270 -s 27 -f 0.0740250464306 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome24.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5972232835842959630' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000231385.3_ASM23138v3.fa' -l 150 -m 270 -s 27 -f 1.6444103611 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome12.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '960470798530113712' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000023785.1_ASM2378v1.fa' -l 150 -m 270 -s 27 -f 0.619289522307 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome18.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7289867114437282797' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000242255.3_ASM24225v3.fa' -l 150 -m 270 -s 27 -f 0.431040475993 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome17.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8325445614955573618' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000022345.1_ASM2234v1.fa' -l 150 -m 270 -s 27 -f 0.280251374957 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome16.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4032588206859822583' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013785.1_ASM1378v1.fa' -l 150 -m 270 -s 27 -f 0.164471789988 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome19.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '9154868521907982756' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000445015.1_ASM44501v1.fa' -l 150 -m 270 -s 27 -f 0.0930114420838 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome2.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3791793312957119272' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001877055.1_ASM187705v1.fa' -l 150 -m 270 -s 27 -f 0.435005207827 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome4.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7335595946631044662' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092985.1_ASM9298v1.fa' -l 150 -m 270 -s 27 -f 0.156874299687 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome4.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '273999266259841730' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143845.1_ASM14384v1.fa' -l 150 -m 270 -s 27 -f 0.195407056076 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome5.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7667368417028577239' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000265425.1_ASM26542v1.fa' -l 150 -m 270 -s 27 -f 0.085483281301 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome3.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8405957314510317237' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000439255.1_ASM43925v1.fa' -l 150 -m 270 -s 27 -f 0.0803475960976 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome20.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3700807468622056613' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092825.1_ASM9282v1.fa' -l 150 -m 270 -s 27 -f 15.0417816633 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome6.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3788921587287678285' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000235405.3_ASM23540v3.fa' -l 150 -m 270 -s 27 -f 0.130894900712 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome23.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5563229184809697938' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013285.1_ASM1328v1.fa' -l 150 -m 270 -s 27 -f 0.0433996273887 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome9.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4332904986203180115' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000325705.1_ASM32570v1.fa' -l 150 -m 270 -s 27 -f 0.19670113602 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome7.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5637970190768261373' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000233715.3_ASM23371v3.fa' -l 150 -m 270 -s 27 -f 0.152202737166 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome13.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6019309440560215503' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001692755.1_ASM169275v1.fa' -l 150 -m 270 -s 27 -f 0.0509038135481 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome10.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '2651620895547496590' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000015865.1_ASM1586v1.fa' -l 150 -m 270 -s 27 -f 5.44956987868 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome10.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6814524274036688098' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092125.1_ASM9212v1.fa' -l 150 -m 270 -s 27 -f 0.726825188429 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome8.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6335199120346316389' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143985.1_ASM14398v1.fa' -l 150 -m 270 -s 27 -f 0.238639037797 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_1/reads/Genome22.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8271593220497324316' 2019-09-18 16:47:49 INFO: [GenomePreparation 6110572091] Simulating reads finished 2019-09-18 16:47:49 INFO: [GenomePreparation 62765036348] Using 'mbarc' error profile. 2019-09-18 16:47:49 INFO: [GenomePreparation 62765036348] Reading distribution file 2019-09-18 16:47:49 INFO: [GenomePreparation 62765036348] Reading genome location file 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads using ReadSimulationArtIllumina readsimulator... 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome15.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000227705.3_ASM22770v3.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome14.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000006785.2_ASM678v2.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome11.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000255115.3_ASM25511v3.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome24.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000025905.1_ASM2590v1.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome12.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000231385.3_ASM23138v3.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome18.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000023785.1_ASM2378v1.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome17.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000242255.3_ASM24225v3.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome16.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000022345.1_ASM2234v1.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome19.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013785.1_ASM1378v1.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome2.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000445015.1_ASM44501v1.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome4.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001877055.1_ASM187705v1.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome4.1: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092985.1_ASM9298v1.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome5.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143845.1_ASM14384v1.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome3.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000265425.1_ASM26542v1.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome20.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000439255.1_ASM43925v1.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome6.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092825.1_ASM9282v1.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome23.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000235405.3_ASM23540v3.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome9.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013285.1_ASM1328v1.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome7.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000325705.1_ASM32570v1.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome13.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000233715.3_ASM23371v3.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome10.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001692755.1_ASM169275v1.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome10.1: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000015865.1_ASM1586v1.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome8.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092125.1_ASM9212v1.fa' 2019-09-18 16:48:21 INFO: [GenomePreparation 62765036348] Simulating reads from Genome22.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143985.1_ASM14398v1.fa' /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file 2019-09-18 16:48:22 ERROR: [GenomePreparation 62765036348] 24 commands returned errors! Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000227705.3_ASM22770v3.fa' -l 150 -m 270 -s 27 -f 0.0236294248906 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome15.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6104356509265831362' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000006785.2_ASM678v2.fa' -l 150 -m 270 -s 27 -f 2.58395052892 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome14.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4341836114100806889' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000255115.3_ASM25511v3.fa' -l 150 -m 270 -s 27 -f 1.48165260807 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome11.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3012330242564776858' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000025905.1_ASM2590v1.fa' -l 150 -m 270 -s 27 -f 3.13804143637 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome24.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '648318820407880466' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000231385.3_ASM23138v3.fa' -l 150 -m 270 -s 27 -f 4.40603301672 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome12.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '763722701681431269' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000023785.1_ASM2378v1.fa' -l 150 -m 270 -s 27 -f 0.677758072873 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome18.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6878765897630716283' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000242255.3_ASM24225v3.fa' -l 150 -m 270 -s 27 -f 0.0217403624317 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome17.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '999363601508512434' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000022345.1_ASM2234v1.fa' -l 150 -m 270 -s 27 -f 0.0167173485152 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome16.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8534909367676564945' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013785.1_ASM1378v1.fa' -l 150 -m 270 -s 27 -f 2.76386868027 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome19.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5728050449885639433' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000445015.1_ASM44501v1.fa' -l 150 -m 270 -s 27 -f 1.20444175582 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome2.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5889614174078967100' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001877055.1_ASM187705v1.fa' -l 150 -m 270 -s 27 -f 1.09083402072 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome4.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3680798494588086429' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092985.1_ASM9298v1.fa' -l 150 -m 270 -s 27 -f 0.514913349681 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome4.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8760250390936217379' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143845.1_ASM14384v1.fa' -l 150 -m 270 -s 27 -f 1.75070938364 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome5.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8973921278072895817' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000265425.1_ASM26542v1.fa' -l 150 -m 270 -s 27 -f 0.344002371297 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome3.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '2611883655827134513' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000439255.1_ASM43925v1.fa' -l 150 -m 270 -s 27 -f 0.0122161081273 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome20.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1742185582900226938' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092825.1_ASM9282v1.fa' -l 150 -m 270 -s 27 -f 0.465768305315 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome6.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3043646795791608389' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000235405.3_ASM23540v3.fa' -l 150 -m 270 -s 27 -f 1.9668092859 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome23.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1466291368592733549' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013285.1_ASM1328v1.fa' -l 150 -m 270 -s 27 -f 0.00391986087982 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome9.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '964628925951600851' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000325705.1_ASM32570v1.fa' -l 150 -m 270 -s 27 -f 0.0829300644559 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome7.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3787922442949922283' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000233715.3_ASM23371v3.fa' -l 150 -m 270 -s 27 -f 0.256509404557 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome13.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6650248808250515499' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001692755.1_ASM169275v1.fa' -l 150 -m 270 -s 27 -f 0.00643398718045 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome10.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '199236439311068295' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000015865.1_ASM1586v1.fa' -l 150 -m 270 -s 27 -f 0.00056204087581 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome10.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '2465690768369492381' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092125.1_ASM9212v1.fa' -l 150 -m 270 -s 27 -f 3.04578950834 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome8.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8929950216025876184' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143985.1_ASM14398v1.fa' -l 150 -m 270 -s 27 -f 0.165035435525 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_2/reads/Genome22.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3944327471971323477' 2019-09-18 16:48:22 INFO: [GenomePreparation 62765036348] Simulating reads finished 2019-09-18 16:48:22 INFO: [GenomePreparation 38941186721] Using 'mbarc' error profile. 2019-09-18 16:48:22 INFO: [GenomePreparation 38941186721] Reading distribution file 2019-09-18 16:48:22 INFO: [GenomePreparation 38941186721] Reading genome location file 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads using ReadSimulationArtIllumina readsimulator... 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome15.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000227705.3_ASM22770v3.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome14.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000006785.2_ASM678v2.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome11.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000255115.3_ASM25511v3.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome24.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000025905.1_ASM2590v1.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome12.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000231385.3_ASM23138v3.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome18.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000023785.1_ASM2378v1.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome17.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000242255.3_ASM24225v3.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome16.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000022345.1_ASM2234v1.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome19.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013785.1_ASM1378v1.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome2.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000445015.1_ASM44501v1.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome4.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001877055.1_ASM187705v1.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome4.1: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092985.1_ASM9298v1.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome5.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143845.1_ASM14384v1.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome3.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000265425.1_ASM26542v1.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome20.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000439255.1_ASM43925v1.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome6.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092825.1_ASM9282v1.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome23.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000235405.3_ASM23540v3.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome9.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013285.1_ASM1328v1.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome7.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000325705.1_ASM32570v1.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome13.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000233715.3_ASM23371v3.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome10.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001692755.1_ASM169275v1.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome10.1: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000015865.1_ASM1586v1.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome8.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092125.1_ASM9212v1.fa' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads from Genome22.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143985.1_ASM14398v1.fa' /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file 2019-09-18 16:48:55 ERROR: [GenomePreparation 38941186721] 24 commands returned errors! Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000227705.3_ASM22770v3.fa' -l 150 -m 270 -s 27 -f 2.11752227267 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome15.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3777467101548818015' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000006785.2_ASM678v2.fa' -l 150 -m 270 -s 27 -f 0.0208734163443 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome14.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3720331471994954861' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000255115.3_ASM25511v3.fa' -l 150 -m 270 -s 27 -f 0.0125443037186 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome11.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5159179158037364203' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000025905.1_ASM2590v1.fa' -l 150 -m 270 -s 27 -f 0.401493122401 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome24.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7625620031909567305' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000231385.3_ASM23138v3.fa' -l 150 -m 270 -s 27 -f 0.0565947959609 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome12.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8650928676662900388' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000023785.1_ASM2378v1.fa' -l 150 -m 270 -s 27 -f 0.0358174902367 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome18.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8926675003452011300' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000242255.3_ASM24225v3.fa' -l 150 -m 270 -s 27 -f 0.0257099924494 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome17.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1797970912668922300' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000022345.1_ASM2234v1.fa' -l 150 -m 270 -s 27 -f 0.0401356257586 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome16.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1959245030434007391' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013785.1_ASM1378v1.fa' -l 150 -m 270 -s 27 -f 0.076803752289 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome19.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6958223177327531369' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000445015.1_ASM44501v1.fa' -l 150 -m 270 -s 27 -f 20.947890568 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome2.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1346707924661313458' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001877055.1_ASM187705v1.fa' -l 150 -m 270 -s 27 -f 0.0368077866054 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome4.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8648432905263435900' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092985.1_ASM9298v1.fa' -l 150 -m 270 -s 27 -f 0.0616730619657 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome4.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5141200233203708959' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143845.1_ASM14384v1.fa' -l 150 -m 270 -s 27 -f 0.0576362015605 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome5.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3900615631887680927' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000265425.1_ASM26542v1.fa' -l 150 -m 270 -s 27 -f 0.142589352449 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome3.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6187642262572110828' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000439255.1_ASM43925v1.fa' -l 150 -m 270 -s 27 -f 0.0858950961294 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome20.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4289739608269085119' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092825.1_ASM9282v1.fa' -l 150 -m 270 -s 27 -f 0.25003805899 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome6.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7479044890100018023' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000235405.3_ASM23540v3.fa' -l 150 -m 270 -s 27 -f 0.0335240199464 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome23.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1309432699495124740' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013285.1_ASM1328v1.fa' -l 150 -m 270 -s 27 -f 0.122350451404 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome9.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6504539607328600621' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000325705.1_ASM32570v1.fa' -l 150 -m 270 -s 27 -f 2.72675487776 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome7.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '9203591363923042949' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000233715.3_ASM23371v3.fa' -l 150 -m 270 -s 27 -f 0.063072232182 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome13.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5631110812145068767' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001692755.1_ASM169275v1.fa' -l 150 -m 270 -s 27 -f 0.00949927736046 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome10.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '914910455585275909' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000015865.1_ASM1586v1.fa' -l 150 -m 270 -s 27 -f 0.000208546926796 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome10.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6201902983770038796' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092125.1_ASM9212v1.fa' -l 150 -m 270 -s 27 -f 1.0961625097 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome8.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8207728848216510612' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143985.1_ASM14398v1.fa' -l 150 -m 270 -s 27 -f 0.159787228528 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_3/reads/Genome22.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '2319196303758205563' 2019-09-18 16:48:55 INFO: [GenomePreparation 38941186721] Simulating reads finished 2019-09-18 16:48:55 INFO: [GenomePreparation 82206457402] Using 'mbarc' error profile. 2019-09-18 16:48:55 INFO: [GenomePreparation 82206457402] Reading distribution file 2019-09-18 16:48:55 INFO: [GenomePreparation 82206457402] Reading genome location file 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads using ReadSimulationArtIllumina readsimulator... 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome15.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000227705.3_ASM22770v3.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome14.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000006785.2_ASM678v2.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome11.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000255115.3_ASM25511v3.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome24.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000025905.1_ASM2590v1.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome12.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000231385.3_ASM23138v3.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome18.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000023785.1_ASM2378v1.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome17.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000242255.3_ASM24225v3.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome16.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000022345.1_ASM2234v1.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome19.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013785.1_ASM1378v1.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome2.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000445015.1_ASM44501v1.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome4.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001877055.1_ASM187705v1.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome4.1: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092985.1_ASM9298v1.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome5.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143845.1_ASM14384v1.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome3.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000265425.1_ASM26542v1.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome20.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000439255.1_ASM43925v1.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome6.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092825.1_ASM9282v1.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome23.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000235405.3_ASM23540v3.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome9.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013285.1_ASM1328v1.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome7.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000325705.1_ASM32570v1.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome13.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000233715.3_ASM23371v3.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome10.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001692755.1_ASM169275v1.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome10.1: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000015865.1_ASM1586v1.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome8.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092125.1_ASM9212v1.fa' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads from Genome22.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143985.1_ASM14398v1.fa' /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file 2019-09-18 16:49:29 ERROR: [GenomePreparation 82206457402] 24 commands returned errors! Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000227705.3_ASM22770v3.fa' -l 150 -m 270 -s 27 -f 0.738672858091 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome15.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7531050112934413725' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000006785.2_ASM678v2.fa' -l 150 -m 270 -s 27 -f 0.727268176066 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome14.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3629991436371908823' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000255115.3_ASM25511v3.fa' -l 150 -m 270 -s 27 -f 0.0221358622874 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome11.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1951234862847630256' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000025905.1_ASM2590v1.fa' -l 150 -m 270 -s 27 -f 0.253489196275 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome24.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6408568641814027543' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000231385.3_ASM23138v3.fa' -l 150 -m 270 -s 27 -f 15.9874853832 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome12.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1569355017199328508' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000023785.1_ASM2378v1.fa' -l 150 -m 270 -s 27 -f 0.339229149109 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome18.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4674112303975796831' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000242255.3_ASM24225v3.fa' -l 150 -m 270 -s 27 -f 0.0333804932052 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome17.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7467378724561898619' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000022345.1_ASM2234v1.fa' -l 150 -m 270 -s 27 -f 0.267059015574 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome16.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5110932559621532692' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013785.1_ASM1378v1.fa' -l 150 -m 270 -s 27 -f 0.110274600896 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome19.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4917647592443939176' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000445015.1_ASM44501v1.fa' -l 150 -m 270 -s 27 -f 0.325927363407 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome2.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '2570137751802357233' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001877055.1_ASM187705v1.fa' -l 150 -m 270 -s 27 -f 0.480432519034 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome4.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1786886078401475941' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092985.1_ASM9298v1.fa' -l 150 -m 270 -s 27 -f 0.453261341719 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome4.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '9135999925617253045' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143845.1_ASM14384v1.fa' -l 150 -m 270 -s 27 -f 0.0301775664319 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome5.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1735296783791765708' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000265425.1_ASM26542v1.fa' -l 150 -m 270 -s 27 -f 0.128195152688 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome3.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8784327356854322326' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000439255.1_ASM43925v1.fa' -l 150 -m 270 -s 27 -f 0.778318803269 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome20.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5818651263618788645' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092825.1_ASM9282v1.fa' -l 150 -m 270 -s 27 -f 0.00598084801068 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome6.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '2277154856109721490' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000235405.3_ASM23540v3.fa' -l 150 -m 270 -s 27 -f 0.155022902301 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome23.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4842248572602545334' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013285.1_ASM1328v1.fa' -l 150 -m 270 -s 27 -f 0.0158930268533 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome9.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5500783340478918802' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000325705.1_ASM32570v1.fa' -l 150 -m 270 -s 27 -f 0.0343885449299 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome7.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7379506234131516396' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000233715.3_ASM23371v3.fa' -l 150 -m 270 -s 27 -f 0.105834236057 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome13.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4528628909502115173' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001692755.1_ASM169275v1.fa' -l 150 -m 270 -s 27 -f 0.00886500370201 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome10.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7609641967920287440' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000015865.1_ASM1586v1.fa' -l 150 -m 270 -s 27 -f 0.0691019854166 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome10.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3565864575726367469' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092125.1_ASM9212v1.fa' -l 150 -m 270 -s 27 -f 0.0107754208109 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome8.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '2724200293366818466' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143985.1_ASM14398v1.fa' -l 150 -m 270 -s 27 -f 0.0814939014538 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_4/reads/Genome22.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6533966443404235522' 2019-09-18 16:49:29 INFO: [GenomePreparation 82206457402] Simulating reads finished 2019-09-18 16:49:29 INFO: [GenomePreparation 60420019121] Using 'mbarc' error profile. 2019-09-18 16:49:29 INFO: [GenomePreparation 60420019121] Reading distribution file 2019-09-18 16:49:29 INFO: [GenomePreparation 60420019121] Reading genome location file 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads using ReadSimulationArtIllumina readsimulator... 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome15.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000227705.3_ASM22770v3.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome14.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000006785.2_ASM678v2.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome11.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000255115.3_ASM25511v3.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome24.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000025905.1_ASM2590v1.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome12.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000231385.3_ASM23138v3.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome18.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000023785.1_ASM2378v1.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome17.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000242255.3_ASM24225v3.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome16.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000022345.1_ASM2234v1.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome19.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013785.1_ASM1378v1.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome2.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000445015.1_ASM44501v1.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome4.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001877055.1_ASM187705v1.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome4.1: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092985.1_ASM9298v1.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome5.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143845.1_ASM14384v1.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome3.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000265425.1_ASM26542v1.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome20.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000439255.1_ASM43925v1.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome6.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092825.1_ASM9282v1.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome23.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000235405.3_ASM23540v3.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome9.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013285.1_ASM1328v1.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome7.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000325705.1_ASM32570v1.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome13.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000233715.3_ASM23371v3.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome10.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001692755.1_ASM169275v1.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome10.1: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000015865.1_ASM1586v1.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome8.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092125.1_ASM9212v1.fa' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads from Genome22.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143985.1_ASM14398v1.fa' /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file 2019-09-18 16:50:02 ERROR: [GenomePreparation 60420019121] 24 commands returned errors! Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000227705.3_ASM22770v3.fa' -l 150 -m 270 -s 27 -f 0.00850951067695 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome15.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5280417641122021806' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000006785.2_ASM678v2.fa' -l 150 -m 270 -s 27 -f 0.498660428084 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome14.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1184016716558821156' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000255115.3_ASM25511v3.fa' -l 150 -m 270 -s 27 -f 1.275437658 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome11.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5148476119446430282' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000025905.1_ASM2590v1.fa' -l 150 -m 270 -s 27 -f 0.0808254531499 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome24.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '2823274661932134906' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000231385.3_ASM23138v3.fa' -l 150 -m 270 -s 27 -f 1.94931788834 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome12.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7654947662171585263' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000023785.1_ASM2378v1.fa' -l 150 -m 270 -s 27 -f 0.0338960296739 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome18.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7055274181429805872' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000242255.3_ASM24225v3.fa' -l 150 -m 270 -s 27 -f 0.0588402609567 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome17.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4442504617755710795' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000022345.1_ASM2234v1.fa' -l 150 -m 270 -s 27 -f 0.161904855797 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome16.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '2229101775022762875' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013785.1_ASM1378v1.fa' -l 150 -m 270 -s 27 -f 1.20839195739 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome19.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4711830799950144509' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000445015.1_ASM44501v1.fa' -l 150 -m 270 -s 27 -f 0.00711150101341 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome2.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1086397571222298294' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001877055.1_ASM187705v1.fa' -l 150 -m 270 -s 27 -f 1.04972263696 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome4.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '2899288108695068605' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092985.1_ASM9298v1.fa' -l 150 -m 270 -s 27 -f 2.65327773524 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome4.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5665764581150915984' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143845.1_ASM14384v1.fa' -l 150 -m 270 -s 27 -f 0.171355832335 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome5.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3436157546854272087' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000265425.1_ASM26542v1.fa' -l 150 -m 270 -s 27 -f 6.27478219614 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome3.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3413834342169642176' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000439255.1_ASM43925v1.fa' -l 150 -m 270 -s 27 -f 0.0264875714729 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome20.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8973521899333168403' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092825.1_ASM9282v1.fa' -l 150 -m 270 -s 27 -f 1.11677975907 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome6.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '321361970589196097' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000235405.3_ASM23540v3.fa' -l 150 -m 270 -s 27 -f 0.0808457355086 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome23.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8330080698378373049' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013285.1_ASM1328v1.fa' -l 150 -m 270 -s 27 -f 0.0403799889082 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome9.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5839350428367463217' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000325705.1_ASM32570v1.fa' -l 150 -m 270 -s 27 -f 0.276925588632 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome7.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6620619850479067623' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000233715.3_ASM23371v3.fa' -l 150 -m 270 -s 27 -f 0.636037212266 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome13.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7567061032216770818' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001692755.1_ASM169275v1.fa' -l 150 -m 270 -s 27 -f 0.0341392150739 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome10.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8712497144893392833' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000015865.1_ASM1586v1.fa' -l 150 -m 270 -s 27 -f 1.33955600715 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome10.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1839447605127100198' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092125.1_ASM9212v1.fa' -l 150 -m 270 -s 27 -f 1.21097075298 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome8.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6694789659343668821' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143985.1_ASM14398v1.fa' -l 150 -m 270 -s 27 -f 0.0963191380519 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_5/reads/Genome22.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4799502576204215588' 2019-09-18 16:50:02 INFO: [GenomePreparation 60420019121] Simulating reads finished 2019-09-18 16:50:02 INFO: [GenomePreparation 65450777406] Using 'mbarc' error profile. 2019-09-18 16:50:02 INFO: [GenomePreparation 65450777406] Reading distribution file 2019-09-18 16:50:02 INFO: [GenomePreparation 65450777406] Reading genome location file 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads using ReadSimulationArtIllumina readsimulator... 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome15.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000227705.3_ASM22770v3.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome14.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000006785.2_ASM678v2.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome11.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000255115.3_ASM25511v3.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome24.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000025905.1_ASM2590v1.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome12.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000231385.3_ASM23138v3.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome18.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000023785.1_ASM2378v1.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome17.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000242255.3_ASM24225v3.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome16.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000022345.1_ASM2234v1.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome19.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013785.1_ASM1378v1.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome2.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000445015.1_ASM44501v1.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome4.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001877055.1_ASM187705v1.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome4.1: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092985.1_ASM9298v1.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome5.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143845.1_ASM14384v1.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome3.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000265425.1_ASM26542v1.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome20.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000439255.1_ASM43925v1.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome6.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092825.1_ASM9282v1.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome23.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000235405.3_ASM23540v3.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome9.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013285.1_ASM1328v1.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome7.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000325705.1_ASM32570v1.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome13.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000233715.3_ASM23371v3.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome10.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001692755.1_ASM169275v1.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome10.1: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000015865.1_ASM1586v1.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome8.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092125.1_ASM9212v1.fa' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads from Genome22.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143985.1_ASM14398v1.fa' /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file 2019-09-18 16:50:36 ERROR: [GenomePreparation 65450777406] 24 commands returned errors! Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000227705.3_ASM22770v3.fa' -l 150 -m 270 -s 27 -f 0.0611792373475 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome15.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4926651616513102535' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000006785.2_ASM678v2.fa' -l 150 -m 270 -s 27 -f 0.281830006876 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome14.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5825029644312866544' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000255115.3_ASM25511v3.fa' -l 150 -m 270 -s 27 -f 5.18915110479 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome11.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1910290520429932407' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000025905.1_ASM2590v1.fa' -l 150 -m 270 -s 27 -f 0.097496731929 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome24.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6125432803496012920' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000231385.3_ASM23138v3.fa' -l 150 -m 270 -s 27 -f 0.159954534057 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome12.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '9114604956615318490' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000023785.1_ASM2378v1.fa' -l 150 -m 270 -s 27 -f 0.0211155452534 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome18.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6102907442965010996' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000242255.3_ASM24225v3.fa' -l 150 -m 270 -s 27 -f 0.475890267104 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome17.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6514543423012632397' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000022345.1_ASM2234v1.fa' -l 150 -m 270 -s 27 -f 0.676823822132 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome16.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6416595016992496965' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013785.1_ASM1378v1.fa' -l 150 -m 270 -s 27 -f 1.30572984516 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome19.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '375682294997244917' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000445015.1_ASM44501v1.fa' -l 150 -m 270 -s 27 -f 0.00746317805953 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome2.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4294735719646327329' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001877055.1_ASM187705v1.fa' -l 150 -m 270 -s 27 -f 0.408811432132 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome4.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5369423781758652487' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092985.1_ASM9298v1.fa' -l 150 -m 270 -s 27 -f 4.07476077938 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome4.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '515107054195482212' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143845.1_ASM14384v1.fa' -l 150 -m 270 -s 27 -f 0.161507771132 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome5.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3161665149167178643' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000265425.1_ASM26542v1.fa' -l 150 -m 270 -s 27 -f 0.38641909214 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome3.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5763933752008803224' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000439255.1_ASM43925v1.fa' -l 150 -m 270 -s 27 -f 0.80129394406 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome20.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8729187635106207833' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092825.1_ASM9282v1.fa' -l 150 -m 270 -s 27 -f 0.0883694338455 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome6.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1409539343623037137' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000235405.3_ASM23540v3.fa' -l 150 -m 270 -s 27 -f 0.255203540916 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome23.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '300723880614045248' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013285.1_ASM1328v1.fa' -l 150 -m 270 -s 27 -f 0.21870360079 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome9.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '537089320301221165' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000325705.1_ASM32570v1.fa' -l 150 -m 270 -s 27 -f 0.761419377723 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome7.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1783983337048704043' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000233715.3_ASM23371v3.fa' -l 150 -m 270 -s 27 -f 0.222177624165 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome13.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1165239428763041288' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001692755.1_ASM169275v1.fa' -l 150 -m 270 -s 27 -f 0.551677874559 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome10.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4603659186271981026' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000015865.1_ASM1586v1.fa' -l 150 -m 270 -s 27 -f 0.00209122714696 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome10.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1217464994323820603' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092125.1_ASM9212v1.fa' -l 150 -m 270 -s 27 -f 3.36008026698 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome8.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3582161426166743754' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143985.1_ASM14398v1.fa' -l 150 -m 270 -s 27 -f 0.941180286738 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_6/reads/Genome22.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4283334712577689414' 2019-09-18 16:50:36 INFO: [GenomePreparation 65450777406] Simulating reads finished 2019-09-18 16:50:36 INFO: [GenomePreparation 63650388452] Using 'mbarc' error profile. 2019-09-18 16:50:36 INFO: [GenomePreparation 63650388452] Reading distribution file 2019-09-18 16:50:36 INFO: [GenomePreparation 63650388452] Reading genome location file 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads using ReadSimulationArtIllumina readsimulator... 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome15.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000227705.3_ASM22770v3.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome14.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000006785.2_ASM678v2.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome11.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000255115.3_ASM25511v3.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome24.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000025905.1_ASM2590v1.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome12.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000231385.3_ASM23138v3.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome18.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000023785.1_ASM2378v1.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome17.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000242255.3_ASM24225v3.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome16.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000022345.1_ASM2234v1.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome19.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013785.1_ASM1378v1.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome2.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000445015.1_ASM44501v1.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome4.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001877055.1_ASM187705v1.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome4.1: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092985.1_ASM9298v1.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome5.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143845.1_ASM14384v1.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome3.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000265425.1_ASM26542v1.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome20.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000439255.1_ASM43925v1.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome6.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092825.1_ASM9282v1.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome23.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000235405.3_ASM23540v3.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome9.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013285.1_ASM1328v1.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome7.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000325705.1_ASM32570v1.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome13.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000233715.3_ASM23371v3.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome10.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001692755.1_ASM169275v1.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome10.1: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000015865.1_ASM1586v1.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome8.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092125.1_ASM9212v1.fa' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads from Genome22.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143985.1_ASM14398v1.fa' /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file 2019-09-18 16:51:10 ERROR: [GenomePreparation 63650388452] 24 commands returned errors! Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000227705.3_ASM22770v3.fa' -l 150 -m 270 -s 27 -f 1.16223367638 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome15.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8876236385047511755' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000006785.2_ASM678v2.fa' -l 150 -m 270 -s 27 -f 0.0351228876839 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome14.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '9139606032981622802' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000255115.3_ASM25511v3.fa' -l 150 -m 270 -s 27 -f 2.71564576104 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome11.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5920536301151733190' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000025905.1_ASM2590v1.fa' -l 150 -m 270 -s 27 -f 0.33331611751 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome24.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3008026452653006699' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000231385.3_ASM23138v3.fa' -l 150 -m 270 -s 27 -f 2.78691577026 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome12.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3387697500279031096' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000023785.1_ASM2378v1.fa' -l 150 -m 270 -s 27 -f 0.479418743296 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome18.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5082990477201692479' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000242255.3_ASM24225v3.fa' -l 150 -m 270 -s 27 -f 0.98645817092 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome17.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5492779129187261090' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000022345.1_ASM2234v1.fa' -l 150 -m 270 -s 27 -f 0.34413431012 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome16.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '2614521913280815058' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013785.1_ASM1378v1.fa' -l 150 -m 270 -s 27 -f 0.242070811368 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome19.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1605256577376124058' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000445015.1_ASM44501v1.fa' -l 150 -m 270 -s 27 -f 2.08879525803 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome2.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8522479322622095644' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001877055.1_ASM187705v1.fa' -l 150 -m 270 -s 27 -f 0.656880326586 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome4.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7430549589744892043' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092985.1_ASM9298v1.fa' -l 150 -m 270 -s 27 -f 1.0933725616 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome4.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3331443969978552153' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143845.1_ASM14384v1.fa' -l 150 -m 270 -s 27 -f 2.04554818156 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome5.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5429869108025086252' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000265425.1_ASM26542v1.fa' -l 150 -m 270 -s 27 -f 0.158892340492 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome3.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7733986426241720738' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000439255.1_ASM43925v1.fa' -l 150 -m 270 -s 27 -f 5.71347368023 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome20.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5296463663275388786' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092825.1_ASM9282v1.fa' -l 150 -m 270 -s 27 -f 0.860547387258 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome6.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '257192024680787384' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000235405.3_ASM23540v3.fa' -l 150 -m 270 -s 27 -f 0.00701278718646 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome23.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8903073287943182952' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013285.1_ASM1328v1.fa' -l 150 -m 270 -s 27 -f 0.667808556307 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome9.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5150444752362448589' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000325705.1_ASM32570v1.fa' -l 150 -m 270 -s 27 -f 0.0774723593664 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome7.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8817524348361553683' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000233715.3_ASM23371v3.fa' -l 150 -m 270 -s 27 -f 0.39967542158 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome13.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6334990235501407115' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001692755.1_ASM169275v1.fa' -l 150 -m 270 -s 27 -f 0.018247658396 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome10.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3688785693941499203' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000015865.1_ASM1586v1.fa' -l 150 -m 270 -s 27 -f 0.0394533805712 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome10.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1984189284863999759' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092125.1_ASM9212v1.fa' -l 150 -m 270 -s 27 -f 0.0130613223418 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome8.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6847709721201677706' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143985.1_ASM14398v1.fa' -l 150 -m 270 -s 27 -f 0.170133599969 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_7/reads/Genome22.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1058322716800364135' 2019-09-18 16:51:10 INFO: [GenomePreparation 63650388452] Simulating reads finished 2019-09-18 16:51:10 INFO: [GenomePreparation 26915837860] Using 'mbarc' error profile. 2019-09-18 16:51:10 INFO: [GenomePreparation 26915837860] Reading distribution file 2019-09-18 16:51:10 INFO: [GenomePreparation 26915837860] Reading genome location file 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads using ReadSimulationArtIllumina readsimulator... 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome15.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000227705.3_ASM22770v3.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome14.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000006785.2_ASM678v2.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome11.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000255115.3_ASM25511v3.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome24.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000025905.1_ASM2590v1.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome12.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000231385.3_ASM23138v3.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome18.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000023785.1_ASM2378v1.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome17.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000242255.3_ASM24225v3.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome16.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000022345.1_ASM2234v1.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome19.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013785.1_ASM1378v1.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome2.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000445015.1_ASM44501v1.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome4.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001877055.1_ASM187705v1.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome4.1: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092985.1_ASM9298v1.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome5.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143845.1_ASM14384v1.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome3.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000265425.1_ASM26542v1.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome20.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000439255.1_ASM43925v1.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome6.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092825.1_ASM9282v1.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome23.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000235405.3_ASM23540v3.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome9.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013285.1_ASM1328v1.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome7.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000325705.1_ASM32570v1.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome13.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000233715.3_ASM23371v3.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome10.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001692755.1_ASM169275v1.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome10.1: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000015865.1_ASM1586v1.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome8.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092125.1_ASM9212v1.fa' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads from Genome22.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143985.1_ASM14398v1.fa' /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file 2019-09-18 16:51:42 ERROR: [GenomePreparation 26915837860] 24 commands returned errors! Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000227705.3_ASM22770v3.fa' -l 150 -m 270 -s 27 -f 0.572050705251 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome15.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6631372907926723023' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000006785.2_ASM678v2.fa' -l 150 -m 270 -s 27 -f 1.69322044245 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome14.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7397990737532634622' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000255115.3_ASM25511v3.fa' -l 150 -m 270 -s 27 -f 3.19281569703 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome11.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8542346977827085802' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000025905.1_ASM2590v1.fa' -l 150 -m 270 -s 27 -f 0.211301630277 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome24.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7440267673335946074' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000231385.3_ASM23138v3.fa' -l 150 -m 270 -s 27 -f 0.0901267692194 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome12.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7114016840567278245' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000023785.1_ASM2378v1.fa' -l 150 -m 270 -s 27 -f 2.20070475875 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome18.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5563845196616307733' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000242255.3_ASM24225v3.fa' -l 150 -m 270 -s 27 -f 1.33695219143 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome17.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5086076450347644825' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000022345.1_ASM2234v1.fa' -l 150 -m 270 -s 27 -f 0.090755333456 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome16.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5543848081055104558' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013785.1_ASM1378v1.fa' -l 150 -m 270 -s 27 -f 0.268218205569 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome19.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6436131013122731340' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000445015.1_ASM44501v1.fa' -l 150 -m 270 -s 27 -f 0.0534747442875 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome2.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4314692776130597170' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001877055.1_ASM187705v1.fa' -l 150 -m 270 -s 27 -f 0.0859730105483 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome4.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1550439798455203703' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092985.1_ASM9298v1.fa' -l 150 -m 270 -s 27 -f 0.124901620204 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome4.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8454687972746170489' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143845.1_ASM14384v1.fa' -l 150 -m 270 -s 27 -f 2.70384915818 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome5.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7177054038377473886' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000265425.1_ASM26542v1.fa' -l 150 -m 270 -s 27 -f 0.00490725388542 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome3.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4435987928112195963' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000439255.1_ASM43925v1.fa' -l 150 -m 270 -s 27 -f 0.144438557834 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome20.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7473872973792824439' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092825.1_ASM9282v1.fa' -l 150 -m 270 -s 27 -f 0.0212501122233 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome6.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '778725218809613875' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000235405.3_ASM23540v3.fa' -l 150 -m 270 -s 27 -f 0.0749871039195 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome23.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5465966987368420733' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013285.1_ASM1328v1.fa' -l 150 -m 270 -s 27 -f 1.43445393069 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome9.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4286512738970151858' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000325705.1_ASM32570v1.fa' -l 150 -m 270 -s 27 -f 1.03776868787 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome7.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4902810185222676426' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000233715.3_ASM23371v3.fa' -l 150 -m 270 -s 27 -f 0.0237071441618 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome13.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4667115303833951537' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001692755.1_ASM169275v1.fa' -l 150 -m 270 -s 27 -f 0.598456252146 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome10.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3675593359572162083' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000015865.1_ASM1586v1.fa' -l 150 -m 270 -s 27 -f 0.0138968920084 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome10.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6394576243188878133' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092125.1_ASM9212v1.fa' -l 150 -m 270 -s 27 -f 0.324222871789 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome8.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1344033268401429232' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143985.1_ASM14398v1.fa' -l 150 -m 270 -s 27 -f 8.7896511157 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_8/reads/Genome22.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '558377334451690894' 2019-09-18 16:51:42 INFO: [GenomePreparation 26915837860] Simulating reads finished 2019-09-18 16:51:42 INFO: [GenomePreparation 11874323490] Using 'mbarc' error profile. 2019-09-18 16:51:42 INFO: [GenomePreparation 11874323490] Reading distribution file 2019-09-18 16:51:42 INFO: [GenomePreparation 11874323490] Reading genome location file 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads using ReadSimulationArtIllumina readsimulator... 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome15.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000227705.3_ASM22770v3.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome14.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000006785.2_ASM678v2.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome11.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000255115.3_ASM25511v3.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome24.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000025905.1_ASM2590v1.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome12.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000231385.3_ASM23138v3.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome18.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000023785.1_ASM2378v1.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome17.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000242255.3_ASM24225v3.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome16.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000022345.1_ASM2234v1.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome19.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013785.1_ASM1378v1.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome2.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000445015.1_ASM44501v1.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome4.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001877055.1_ASM187705v1.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome4.1: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092985.1_ASM9298v1.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome5.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143845.1_ASM14384v1.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome3.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000265425.1_ASM26542v1.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome20.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000439255.1_ASM43925v1.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome6.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092825.1_ASM9282v1.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome23.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000235405.3_ASM23540v3.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome9.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013285.1_ASM1328v1.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome7.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000325705.1_ASM32570v1.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome13.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000233715.3_ASM23371v3.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome10.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001692755.1_ASM169275v1.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome10.1: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000015865.1_ASM1586v1.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome8.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092125.1_ASM9212v1.fa' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads from Genome22.0: '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143985.1_ASM14398v1.fa' /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file /bin/sh: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina: cannot execute binary file 2019-09-18 16:52:13 ERROR: [GenomePreparation 11874323490] 24 commands returned errors! Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000227705.3_ASM22770v3.fa' -l 150 -m 270 -s 27 -f 0.970638477198 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome15.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7196631573368695274' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000006785.2_ASM678v2.fa' -l 150 -m 270 -s 27 -f 0.485203559242 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome14.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5989125061621715334' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000255115.3_ASM25511v3.fa' -l 150 -m 270 -s 27 -f 0.523443833601 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome11.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6100971678659578558' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000025905.1_ASM2590v1.fa' -l 150 -m 270 -s 27 -f 5.53204482327 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome24.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5683815295054548885' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000231385.3_ASM23138v3.fa' -l 150 -m 270 -s 27 -f 2.46516590997 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome12.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8823942846897029716' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000023785.1_ASM2378v1.fa' -l 150 -m 270 -s 27 -f 0.0132954008933 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome18.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '2917647777407788367' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000242255.3_ASM24225v3.fa' -l 150 -m 270 -s 27 -f 0.0853781795534 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome17.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3434702003815041464' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000022345.1_ASM2234v1.fa' -l 150 -m 270 -s 27 -f 0.0375909582181 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome16.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8836885101407822069' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013785.1_ASM1378v1.fa' -l 150 -m 270 -s 27 -f 4.5293646853 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome19.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3609366409486514962' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000445015.1_ASM44501v1.fa' -l 150 -m 270 -s 27 -f 1.4753698719 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome2.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3275895746868893411' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001877055.1_ASM187705v1.fa' -l 150 -m 270 -s 27 -f 0.0741100247958 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome4.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8464357553358744720' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092985.1_ASM9298v1.fa' -l 150 -m 270 -s 27 -f 0.389306961971 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome4.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '668705834167595614' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143845.1_ASM14384v1.fa' -l 150 -m 270 -s 27 -f 0.2399214596 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome5.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '8968910362991847155' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000265425.1_ASM26542v1.fa' -l 150 -m 270 -s 27 -f 0.268000928612 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome3.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5739202065421887484' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000439255.1_ASM43925v1.fa' -l 150 -m 270 -s 27 -f 0.114795439175 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome20.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3316834300783705168' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092825.1_ASM9282v1.fa' -l 150 -m 270 -s 27 -f 5.52562794018 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome6.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4520583949105990487' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000235405.3_ASM23540v3.fa' -l 150 -m 270 -s 27 -f 0.0230716936431 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome23.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '689719885526301474' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000013285.1_ASM1328v1.fa' -l 150 -m 270 -s 27 -f 0.413448824054 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome9.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '4522123779790204782' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000325705.1_ASM32570v1.fa' -l 150 -m 270 -s 27 -f 0.539685858868 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome7.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '1503410458196818188' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000233715.3_ASM23371v3.fa' -l 150 -m 270 -s 27 -f 0.0262741904017 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome13.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '6099419773627525601' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_001692755.1_ASM169275v1.fa' -l 150 -m 270 -s 27 -f 1.10689725661 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome10.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '7603898925059588253' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000015865.1_ASM1586v1.fa' -l 150 -m 270 -s 27 -f 0.0676420963403 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome10.1' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '5028556753685959948' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000092125.1_ASM9212v1.fa' -l 150 -m 270 -s 27 -f 0.350294452389 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome8.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '3553534255678692522' Task failed with return code: 126, task: /Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/art_illumina -sam -na -i '/Users/user/Applications/CAMISIM/out/source_genomes/GCA_000143985.1_ASM14398v1.fa' -l 150 -m 270 -s 27 -f 0.159362115896 -o '/tmp/tmpBpI2y9/2019.09.18_16.45.14_sample_9/reads/Genome22.0' -1 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R1.txt' -2 '/Users/user/Applications/CAMISIM/tools/art_illumina-2.3.6/profiles/ART_MBARC-26_HiSeq_R2.txt' -rs '609005039372753028' 2019-09-18 16:52:13 INFO: [GenomePreparation 11874323490] Simulating reads finished 2019-09-18 16:52:13 INFO: [MetagenomeSimulationPipeline] Generate gold standard assembly 2019-09-18 16:52:13 INFO: [MetadataReader 76565746185] Reading file: '/Users/user/Applications/CAMISIM/out/internal/genome_locations.tsv' 2019-09-18 16:52:13 ERROR: [MetagenomeSimulationPipeline] Empty bam file list in line 106 2019-09-18 16:52:13 INFO: [MetagenomeSimulationPipeline] Metagenome simulation aborted

chuanfuyap commented 5 years ago

okay it seems my Mac is not running artillumina, I have tried it on a linux computer and the program runs fine.

abremges commented 5 years ago

Glad things worked out for you! šŸ‘