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CAMI-challenge / CAMITAX

CAMITAX: Taxon labels for microbial genomes
https://doi.org/10.1101/532473
Apache License 2.0
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Fails to download chekm databases #22

Closed abeliavskaia closed 4 years ago

abeliavskaia commented 4 years ago

Dear Andreas,

I am trying to install CAMITAX with Nextflow, but it cannot download chekm databases because of certificates:

Command executed:                                                                                                                                                                                                              
wget https://data.ace.uq.edu.au/public/CheckM_databases/checkm_data_2015_01_16.tar.gz                 
tar xfv checkm_*.tar.gz && rm checkm_*.tar.gz*
ERROR: The certificate of `data.ace.uq.edu.au' is not trusted.                                                                  
ERROR: The certificate of `data.ace.uq.edu.au' hasn't got a known issuer.

I downloaded it manually, then tried "nextflow run CAMI-challenge/CAMITAX/init.nf --db /path/to/db/folder" with -resume flag, but it didn't help.

AlphaSquad commented 4 years ago

Dear Alex,

that looks like some kind of SSL-certificate problem/error. Do you have ca-certificates installed on the machine you are running CAMITAX on? An unsecure workaround might also be to try to run wget with the --no-check-certificate option. I would not recommend this though.