Using pandas for organizing metrics results and reporting into files

CAMI-challenge / OPAL

OPAL: Open-community Profiling Assessment tooL

https://cami-challenge.github.io/OPAL/

Apache License 2.0

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Closed sjanssen2 closed 6 years ago

sjanssen2 commented 6 years ago

Hey, have you ever used pandas ? It is an extremely useful and powerful library that can handle tabular data really well and fast. Here is a good starter: http://pandas.pydata.org/pandas-docs/stable/10min.html

You could save a lot of manual fiddling with your file generation. Here is my suggestion in form of a pull request. Stefan

pbelmann commented 6 years ago

I'm also a fan of pandas. I used it also in AMBER. It really saves a lot of manual fiddling. Thanks @sjanssen2