What: Add function that creates tile information object using the GridIndexManager.
Why: It might be easier to use this function in the prediction pipeline if the different tiling approaches will be used, in particular the ShiftBoundary tile strategy.
How: Almost duplicates the first compute_tile_info function I wrote, just uses the data stored in GridIndexManager and uses the GridIndexManager.get_location_from_dataset_idx method.
Changes Made
Added: compute_tile_info_legacy to careamics/src/careamics/dataset/tiling/lvae_tiled_patching.py
Modified: Renamed variable tile_grid_coords to tile_grid_indices. This is to try to prevent misinterpretation.
Related Issues
Additional Notes and Examples
The TilingMode enum in the Disentangle repo is not in the current version of the dataset in CAREamics.
Description
GridIndexManager.ShiftBoundarytile strategy.compute_tile_infofunction I wrote, just uses the data stored inGridIndexManagerand uses theGridIndexManager.get_location_from_dataset_idxmethod.Changes Made
compute_tile_info_legacytocareamics/src/careamics/dataset/tiling/lvae_tiled_patching.pytile_grid_coordstotile_grid_indices. This is to try to prevent misinterpretation.Related Issues
Additional Notes and Examples
The
TilingModeenum in the Disentangle repo is not in the current version of the dataset in CAREamics.Note: logic comes from here, mostly only variables have been renamed to match CAREamics naming scheme. https://github.com/ashesh-0/Disentangle/blob/ed99b2614a9e52b496947ccf157d3aaa8db52872/disentangle/analysis/stitch_prediction.py#L37-L66
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