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CATH-summer-2018 / SFAM-naming

Repository for materials that are related to superfamily naming
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What exactly is shared residues %? #4

Open ilsenatorov opened 6 years ago

ilsenatorov commented 6 years ago

a number of superfamilies, for example 1.10.8.1190 have a 100% shared residues but 0% shared proteins with a pfam or a clan.

nataliedawson commented 6 years ago

Shared residues is the percentage of residues shared between all domain members of a given CATH superfamily and a Pfam clan (or family).

Shared proteins (note these are whole proteins not domains) are the proteins shared between both a given CATH superfamily and a Pfam clan (or family), as a percentage of all proteins in the CATH superfamily OR the Pfam clan (or family).