ceesem
commented
4 years ago I think we are going to remove that package, at least as a required install. However, in the meantime I have had more luck with installing it through conda via “conda install -c conda-forge pykdtree”.
Hi all,
I am trying to install meshparty on my Mac Catalina using pip3 install mesh party but I have an error with building wheel for pykdtree and clang: error: unsupported option '-fopenmp'. I have copied the error message below. When I check the environment with
import sys; sys.version, I get: ' \n[Clang 11.0.0 (clang-1100.0.33.17)]' . I checked previous similar issues with pykdtree and it seems like I might not have openmp support. I tried installing llvm from http://openmp.llvm.org but I get zsh: parse error near \n aftercmake ../llvm -DLLVM_ENABLE_PROJECTS=openmp -DCMAKE_C_COMPILER=<C compiler> -DCMAKE_CXX_COMPILER=<C++ compiler>. Instead of ../llvm, I put the path to the llvm folder.Building wheels for collected packages: pykdtree Building wheel for pykdtree (setup.py) ... error ERROR: Command errored out with exit status 1: command: /usr/local/opt/python/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/z5/d_k3z58543zflpwyrr0ktg4m0000gn/T/pip-install-0diaq6g4/pykdtree/setup.py'"'"'; file='"'"'/private/var/folders/z5/d_k3z58543zflpwyrr0ktg4m0000gn/T/pip-install-0diaq6g4/pykdtree/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/z5/d_k3z58543zflpwyrr0ktg4m0000gn/T/pip-wheel-z43xh9hv cwd: /private/var/folders/z5/d_k3z58543zflpwyrr0ktg4m0000gn/T/pip-install-0diaq6g4/pykdtree/ Complete output (15 lines): running bdist_wheel running build running build_py creating build creating build/lib.macosx-10.15-x86_64-3.7 creating build/lib.macosx-10.15-x86_64-3.7/pykdtree copying pykdtree/test_tree.py -> build/lib.macosx-10.15-x86_64-3.7/pykdtree copying pykdtree/init.py -> build/lib.macosx-10.15-x86_64-3.7/pykdtree running build_ext building 'pykdtree.kdtree' extension creating build/temp.macosx-10.15-x86_64-3.7 creating build/temp.macosx-10.15-x86_64-3.7/pykdtree clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -I/usr/local/include -I/usr/local/opt/openssl@1.1/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -c pykdtree/kdtree.c -o build/temp.macosx-10.15-x86_64-3.7/pykdtree/kdtree.o -std=c99 -O3 -fopenmp clang: error: unsupported option '-fopenmp' error: command 'clang' failed with exit status 1
ERROR: Failed building wheel for pykdtree Running setup.py clean for pykdtree Failed to build pykdtree Installing collected packages: shapely, pykdtree, meshparty Running setup.py install for pykdtree ... error ERROR: Command errored out with exit status 1: command: /usr/local/opt/python/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/z5/d_k3z58543zflpwyrr0ktg4m0000gn/T/pip-install-0diaq6g4/pykdtree/setup.py'"'"'; file='"'"'/private/var/folders/z5/d_k3z58543zflpwyrr0ktg4m0000gn/T/pip-install-0diaq6g4/pykdtree/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/z5/d_k3z58543zflpwyrr0ktg4m0000gn/T/pip-record-hhc11pn8/install-record.txt --single-version-externally-managed --compile --install-headers /usr/local/include/python3.7m/pykdtree cwd: /private/var/folders/z5/d_k3z58543zflpwyrr0ktg4m0000gn/T/pip-install-0diaq6g4/pykdtree/ Complete output (15 lines): running install running build running build_py creating build creating build/lib.macosx-10.15-x86_64-3.7 creating build/lib.macosx-10.15-x86_64-3.7/pykdtree copying pykdtree/test_tree.py -> build/lib.macosx-10.15-x86_64-3.7/pykdtree copying pykdtree/init.py -> build/lib.macosx-10.15-x86_64-3.7/pykdtree running build_ext building 'pykdtree.kdtree' extension creating build/temp.macosx-10.15-x86_64-3.7 creating build/temp.macosx-10.15-x86_64-3.7/pykdtree clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -I/usr/local/include -I/usr/local/opt/openssl@1.1/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -c pykdtree/kdtree.c -o build/temp.macosx-10.15-x86_64-3.7/pykdtree/kdtree.o -std=c99 -O3 -fopenmp clang: error: unsupported option '-fopenmp' error: command 'clang' failed with exit status 1
ERROR: Command errored out with exit status 1: /usr/local/opt/python/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/z5/d_k3z58543zflpwyrr0ktg4m0000gn/T/pip-install-0diaq6g4/pykdtree/setup.py'"'"'; file='"'"'/private/var/folders/z5/d_k3z58543zflpwyrr0ktg4m0000gn/T/pip-install-0diaq6g4/pykdtree/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/z5/d_k3z58543zflpwyrr0ktg4m0000gn/T/pip-record-hhc11pn8/install-record.txt --single-version-externally-managed --compile --install-headers /usr/local/include/python3.7m/pykdtree Check the logs for full command output.