CBICA / CaPTk

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
https://www.cbica.upenn.edu/captk
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The version of model is incompatible with this version of CaPTk #1444

Closed xupengfei1009 closed 3 years ago

xupengfei1009 commented 3 years ago

Executable Name: CaPTk v1.8.1 Excuse me. I have a question. When we run DeepMedic for Brain Tumor Segmentation in Ubuntu 16.04 64 bit, it can not work and show "The version of model is incompatible with this version of CaPTK" Where can I download the brainTumorSegmentation for 1.8.1 version please?

sarthakpati commented 3 years ago

Thank you for your interest in CaPTk!

Can you perform the following steps:

xupengfei1009 commented 3 years ago

Thank you for your interest in CaPTk!

Can you perform the following steps:

  • Extract the binaries from the AppImage: user@pc:~# ~/CaPTk/${version}/captk --appimage-extract
  • This will extract the package to the path ~/CaPTk/${version}/squashfs-root/usr/ with the binaries present in ~/CaPTk/${version}/squashfs-root/usr/bin
  • Reply with the output of the following: cat ~/CaPTk/${version}/squashfs-root/usr/data/deepMedic/saved_models/brainTumorSegmentation/VERSION.yaml
  • Also, present the following output: ~/CaPTk/${version}/captk --version

I solved it, you are awesome thanks

sarthakpati commented 3 years ago

Great news! Closing the issue.