CBICA / CaPTk

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
https://www.cbica.upenn.edu/captk
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Diffusion derivatives additions #1454

Closed AlexanderGetka-cbica closed 2 years ago

AlexanderGetka-cbica commented 3 years ago

Fixes #1451 Fixes #1449

Adds functionality for extracting (averaged) b0 images from DWI, and for registering the output. I'm not passing the mask to greedy because the images were already masked in DD, and because it was causing errors for me (and really weird output).