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CBICA / CaPTk

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
https://www.cbica.upenn.edu/captk
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[1.8.2.Alpha] PerfusionAlignment disabled from CLI, not working from GUI #1459

Closed AlexanderGetka-cbica closed 2 years ago

AlexanderGetka-cbica commented 2 years ago

Describe the bug From the CLI, attempting to use PerfusionAlignment yields the following message: This functionality has been removed from this CaPTk release, and we are actively testing an optimized robust implementation that would enable generalization in multi-institutional data. We expect this to be released in our next patch release, expected in Q4 2020

From the GUI, the application will not run, or complains about missing inputs. (Waiting on clarification about this).

To Reproduce Steps to reproduce the behavior:

  1. Run PerfusionAlignment from CLI, with any parameters
  2. See error OR
  3. Launch the CaPTk GUI
  4. Launch PerfusionAlignment from the applications menu
  5. Application fails to run or throws an error about missing inputs.

Expected behavior The CLI error should be disabled in this alpha since as I understand it the changes to it have been made. The GUI error should not happen so long as users provide the right input.

CaPTk Version 1.8.2.Alpha

Desktop (please complete the following information):

Additional context Problem first reported by Jose Garcia.

AlexanderGetka-cbica commented 2 years ago

Cannot reproduce the CLI issue on my Ubuntu install of 1.8.2.Alpha. CLI works (but is finicky).

GUI however does not run. I hit confirm and the application dialog just closes without anything happening. I also cannot even select a mask file with the dialog.

AlexanderGetka-cbica commented 2 years ago

We also need to update the how-to guides for PerfusionAlignment since the params have changed entirely.