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CBICA / CaPTk

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
https://www.cbica.upenn.edu/captk
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BraTSPipeline (and also probably Brain Tumor Segmentation) model version check fails. #1468

Closed AlexanderGetka-cbica closed 2 years ago

AlexanderGetka-cbica commented 2 years ago

Describe the bug When running BraTSPipeline, an error occurs where it says the model version is not compatible with this version of CaPTk.

To Reproduce Steps to reproduce the behavior:

  1. Run the BraTSPipeline with any input.
  2. See error: Starting skull-stripping using DeepMedic. Command for DeepMedic: /Applications/CaPTk_1.9.0.Alpha.app/Contents/Resources/bin/DeepMedic -md /Applications/CaPTk_1.9.0.Alpha.app/Contents/Resources/bin/../data//deepMedic/saved_models/skullStripping/ -i out_from_nifti/T1_to_SRI.nii.gz,out_from_nifti/T1CE_to_SRI.nii.gz,out_from_nifti/T2_to_SRI.nii.gz,out_from_nifti/FL_to_SRI.nii.gz -o out_from_nifti/dmOut_skull/brainMask_SRI.nii.gz The version of model is incompatible with this version of CaPTk. Finished successfully. Brain Mask was not written, cannot proceed.

CaPTk Version 1.9.0.Alpha

Additional context Originally noted by @chiharusako.

Probably also occurs in Brain Tumor Segmentation and potentially other model-based algorithms.

sarthakpati commented 2 years ago

This requires updates to the VERSION.yaml files in https://github.com/CBICA/CaPTk/tree/master/data/deepMedic/saved_models

Updated appropriate wiki instructions.