search

CBICA / CaPTk

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
https://www.cbica.upenn.edu/captk
Other
173 stars 63 forks source link

Perfusion-related fixes (PHI, PerfusionPCA, GUI/CLI) #1476

Closed AlexanderGetka-cbica closed 2 years ago

AlexanderGetka-cbica commented 2 years ago

Fixed #1472 Fixed #1473 Fixed #1474 Fixed #1475 Seems to have also fixed #1450

Summary: Adds a text indicator of 4D slice number to the slider bar. Clarifies perfusionPCA filename requirements (but doesn't make them more intelligent). Fixes loading of 4D and 3D images together. Adds batch mode and time-points parameters to PHI (EGFRvIIISurrogateIndex).

Also disables self-host mac builds in the Azure pipeline. @sarthakpati may need to configure the requirements on GitHub side, not sure about that.

sarthakpati commented 2 years ago

Are we trying to fix Codacy issues, as well? For e.g.:

image

AlexanderGetka-cbica commented 2 years ago

Are we trying to fix Codacy issues, as well? For e.g.:

image

Ah, yeah -- I should've caught that. My bad. I won't change the code-style related ones for this but I'll address any "medium" or above.

AlexanderGetka-cbica commented 2 years ago

I'll remove that commented code in the PR that updates the docs and version. Thanks @sarthakpati !