Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
When we try to load a segmentation that was genrated ITK-SNAP or another software and overlay on top of the image that was segmented, it says that the physical dimensions do not match. However, a look into the nifti headers show that the dimensions are same.
How to reproduce
Steps to reproduce the behavior:
Open a .nifti image on ITK-SNAP.
Draw a 2D segmentation using the paintbrush.
Save the segmentation as a mifti using Segementation > Save Segmentation image.
Open the same .nifti image on CaPTk by File > Load > Image(s)
Now open the mask file with File > Load > ROI
A pop up shows up
Expected behavior
It should overlay the mask onto the image by itself without any issue since all the dimensions and voxel spacings match.
Screenshots
CaPTk Version
I tried 1.7.6 and 1.9.0
Desktop (please complete the following information):
OS: WIndows 10
Windows 10 enterprise, Version 22H2, OS Buiild 19045.2965
Additional context
Please contact Shweta from the CBIG Lab if more information is required.
The bug
When we try to load a segmentation that was genrated ITK-SNAP or another software and overlay on top of the image that was segmented, it says that the physical dimensions do not match. However, a look into the nifti headers show that the dimensions are same.
How to reproduce
Steps to reproduce the behavior:
Expected behavior
It should overlay the mask onto the image by itself without any issue since all the dimensions and voxel spacings match.
Screenshots
CaPTk Version
I tried 1.7.6 and 1.9.0
Desktop (please complete the following information):
Additional context
Please contact Shweta from the CBIG Lab if more information is required.