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CBICA / CaPTk

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
https://www.cbica.upenn.edu/captk
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Illegal Instruction Error: Ubuntu 20.04.6 & Docker #1513

Closed AriBunnell closed 3 months ago

AriBunnell commented 1 year ago

Describe the bug When trying to run either the BreastTexturePipeline or LIBRA from the CLI from the latest CaPTK Docker container I get a fatal error

To Reproduce Steps to reproduce the behavior:

  1. docker run --rm -it -v $(pwd)/test:/app -v {local_img_dir}:/images -v {local_out_dir}:/output --entrypoint /bin/bash cbica/captk
  2. /work/CaPTk/bin/install/appdir/usr/bin/captk /work/CaPTk/bin/install/appdir/usr/bin/BreastTexturePipeline.cwl -i /images/{image}.dcm -o /output or /work/CaPTk/bin/install/appdir/usr/bin/libra /images/{image}.dcm /output
  3. See error

Expected behavior Expect the LIBRA or BreastTexturePipeline to execute completely

CaPTk Version CaPTk v1.9.0.RC

Desktop (please complete the following information):

Additional context The code executes successfully to the same point with either command: 

Running LIBRA-1.0.4 (Revision: 603) on MATLAB R2014b
  >> Analzying single file...
  >> Processing File 1/1: /images/{image}.dcm
   > Checking header
     > WARNING: Age information is missing. Use Default.
   > Checking passed.
...identifying appropriate training model
...using model:Hologic-Processed...
Masking out Breast
Running 15-class FCM
...Getting dense-cluster metrics (i.e. hierarchical agglomeration)

------------------------------------------------------------------------
        Illegal instruction detected at Mon Oct 16 23:21:28 2023
------------------------------------------------------------------------

Configuration:
  Crash Decoding     : Disabled
  Current Visual     : None
  Default Encoding   : UTF-8
  GNU C Library      : 2.17 stable
  MATLAB Architecture: glnxa64
  MATLAB Root        : /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84
  MATLAB Version     : 8.4.0.150421 (R2014b)
  Operating System   : Linux 5.4.0-153-generic #170-Ubuntu SMP Fri Jun 16 13:43:31 UTC 2023 x86_64
  Processor ID       : x86 Family 143 Model 49 Stepping 0, AuthenticAMD
  Software OpenGL    : 0
  Virtual Machine    : Java 1.7.0_11-b21 with Oracle Corporation Java HotSpot(TM) 64-Bit Server VM mixed mode
  Window System      : No active display

Fault Count: 1

Stack Trace

``` > Running LIBRA-1.0.4 (Revision: 603) on MATLAB R2014b >> Analzying single file... >> Processing File 1/1: /images/{image}.dcm > Checking header > WARNING: Age information is missing. Use Default. > Checking passed. ...identifying appropriate training model ...using model:Hologic-Processed... Masking out Breast Running 15-class FCM ...Getting dense-cluster metrics (i.e. hierarchical agglomeration) ------------------------------------------------------------------------ Illegal instruction detected at Mon Oct 16 23:13:15 2023 ------------------------------------------------------------------------ Configuration: Crash Decoding : Disabled Current Visual : None Default Encoding : UTF-8 GNU C Library : 2.17 stable MATLAB Architecture: glnxa64 MATLAB Root : /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84 MATLAB Version : 8.4.0.150421 (R2014b) Operating System : Linux 5.4.0-153-generic #170-Ubuntu SMP Fri Jun 16 13:43:31 UTC 2023 x86_64 Processor ID : x86 Family 143 Model 49 Stepping 0, AuthenticAMD Software OpenGL : 0 Virtual Machine : Java 1.7.0_11-b21 with Oracle Corporation Java HotSpot(TM) 64-Bit Server VM mixed mode Window System : No active display Fault Count: 1 Abnormal termination: Illegal instruction Register State (from fault): RAX = 00007fc9ad658000 RBX = 00007fc9ad664000 RCX = 000000000000000e RDX = 00007fca2bee7640 RSP = 00007fca2ee65100 RBP = 00000000000000cc RSI = 0000000000000000 RDI = 00007fca2ee651d0 R8 = 0000000000000380 R9 = 00007fc9ad664000 R10 = 0000000000001368 R11 = 0000000000000678 R12 = 000000000000001c R13 = 00000000000000cc R14 = 000000000000000c R15 = 000000000000001c RIP = 00007fc9ba8fce02 EFL = 0000000000010212 CS = 0033 FS = 0000 GS = 0000 Stack Trace (from fault): [ 0] 0x00007fc9ba8fce02 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/mkl.so+30535170 mkl_blas_cnr_def_dgemm_kernel_bdz+00000210 [ 1] 0x00007fc9ba8f4665 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/mkl.so+30500453 mkl_blas_cnr_def_xdgemm_bdz+00001381 [ 2] 0x00007fc9ba8f7097 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/mkl.so+30511255 mkl_blas_cnr_def_xdgemm+00004087 [ 3] 0x00007fc9b8e8b674 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/mkl.so+02807412 [ 4] 0x00007fc9b8e87db3 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/mkl.so+02792883 mkl_blas_dgemm+00001475 [ 5] 0x00007fc9b8d2ae8b /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/mkl.so+01363595 DGEMM+00000363 [ 6] 0x00007fca089afd16 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmathlinalg.so+01424662 [ 7] 0x00007fca08a03715 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmathlinalg.so+01767189 [ 8] 0x00007fca08a038d2 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmathlinalg.so+01767634 [ 9] 0x00007fca08a03e39 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmathlinalg.so+01769017 [ 10] 0x00007fca38ffc2d5 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00545493 [ 11] 0x00007fca38fe3e34 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00446004 _ZN13Mfh_MATLAB_fn11dispatch_fhEiPP11mxArray_tagiS2_+00000244 [ 12] 0x00007fca3846b3a3 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+05243811 [ 13] 0x00007fca38399c41 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04385857 [ 14] 0x00007fca3839a9be /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04389310 [ 15] 0x00007fca383a67e9 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04437993 [ 16] 0x00007fca383a6953 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04438355 [ 17] 0x00007fca384de284 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+05714564 [ 18] 0x00007fca382fd26a /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03744362 [ 19] 0x00007fca3837252e /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04224302 [ 20] 0x00007fca39038329 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00791337 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000697 [ 21] 0x00007fca38ff9e07 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00536071 [ 22] 0x00007fca38277164 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03195236 inFullFevalFcn+00000196 [ 23] 0x00007fca38ffc2d5 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00545493 [ 24] 0x00007fca38fe3e34 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00446004 _ZN13Mfh_MATLAB_fn11dispatch_fhEiPP11mxArray_tagiS2_+00000244 [ 25] 0x00007fca38522e6b /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+05996139 [ 26] 0x00007fca38524809 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+06002697 [ 27] 0x00007fca3852503c /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+06004796 [ 28] 0x00007fca383991a3 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04383139 [ 29] 0x00007fca383a686e /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04438126 [ 30] 0x00007fca383a6953 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04438355 [ 31] 0x00007fca384de284 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+05714564 [ 32] 0x00007fca382fd26a /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03744362 [ 33] 0x00007fca3837252e /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04224302 [ 34] 0x00007fca39038329 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00791337 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000697 [ 35] 0x00007fca38348b70 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04053872 [ 36] 0x00007fca382f8e02 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03726850 [ 37] 0x00007fca382fb022 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03735586 [ 38] 0x00007fca38300f87 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03760007 [ 39] 0x00007fca382fc6ff /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03741439 [ 40] 0x00007fca382fd334 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03744564 [ 41] 0x00007fca3837252e /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04224302 [ 42] 0x00007fca39038329 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00791337 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000697 [ 43] 0x00007fca38348b70 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04053872 [ 44] 0x00007fca382f8e02 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03726850 [ 45] 0x00007fca382fb022 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03735586 [ 46] 0x00007fca38300f87 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03760007 [ 47] 0x00007fca382fc6ff /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03741439 [ 48] 0x00007fca382fd334 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03744564 [ 49] 0x00007fca3837252e /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04224302 [ 50] 0x00007fca39038329 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00791337 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000697 [ 51] 0x00007fca38348b70 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04053872 [ 52] 0x00007fca382f8e02 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03726850 [ 53] 0x00007fca382fb022 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03735586 [ 54] 0x00007fca38300f87 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03760007 [ 55] 0x00007fca382fc6ff /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03741439 [ 56] 0x00007fca382fd334 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03744564 [ 57] 0x00007fca3837252e /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04224302 [ 58] 0x00007fca39038329 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00791337 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000697 [ 59] 0x00007fca38522ef4 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+05996276 [ 60] 0x00007fca38524809 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+06002697 [ 61] 0x00007fca3852503c /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+06004796 [ 62] 0x00007fca383991a3 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04383139 [ 63] 0x00007fca383a686e /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04438126 [ 64] 0x00007fca383a6953 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04438355 [ 65] 0x00007fca384de284 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+05714564 [ 66] 0x00007fca382fb3c9 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03736521 [ 67] 0x00007fca38300f87 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03760007 [ 68] 0x00007fca382fc6ff /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03741439 [ 69] 0x00007fca382fd334 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03744564 [ 70] 0x00007fca3837252e /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04224302 [ 71] 0x00007fca39038329 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00791337 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000697 [ 72] 0x00007fca38325bf0 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03910640 [ 73] 0x00007fca38325449 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03908681 [ 74] 0x00007fca38268fd6 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03137494 inCallFcnWithTrap+00000086 [ 75] 0x00007fca382ecc0b /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03677195 [ 76] 0x00007fca3826a560 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03143008 _Z44inCallFcnWithTrapInDesiredWSAndPublishEventsiPP11mxArray_tagiS1_PKcbP15inWorkSpace_tag+00000096 [ 77] 0x00007fca38af8e84 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwiqm.so+00650884 _ZN3iqm15BaseFEvalPlugin7executeEP15inWorkSpace_tagRN5boost10shared_ptrIN14cmddistributor17IIPCompletedEventEEE+00000356 [ 78] 0x00007fca398fb0d9 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmcr.so+00712921 [ 79] 0x00007fca38af4926 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwiqm.so+00633126 [ 80] 0x00007fca38ae07dd /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwiqm.so+00550877 [ 81] 0x00007fca460e8edb /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+01707739 [ 82] 0x00007fca35e4e63d /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwuix.so+00230973 [ 83] 0x00007fca461b01ea /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+02523626 [ 84] 0x00007fca461b0524 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+02524452 [ 85] 0x00007fca461ac07f /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+02506879 [ 86] 0x00007fca461b14b5 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+02528437 [ 87] 0x00007fca461b18e7 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+02529511 [ 88] 0x00007fca461b1fc0 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+02531264 _Z25svWS_ProcessPendingEventsiib+00000080 [ 89] 0x00007fca398e8248 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmcr.so+00635464 [ 90] 0x00007fca398e8564 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmcr.so+00636260 [ 91] 0x00007fca398d4cdd /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmcr.so+00556253 [ 92] 0x00007fca46e0fea5 /lib64/libpthread.so.0+00032421 [ 93] 0x00007fca46b38b0d /lib64/libc.so.6+01043213 clone+00000109 If this problem is reproducible, please submit a Service Request via: http://www.mathworks.com/support/contact_us/ A technical support engineer might contact you with further information. Thank you for your help.** This crash report has been saved to disk as /root/matlab_crash_dump.727-1 ** Caught "std::exception" Exception message is: FatalException ------------------------------------------------------------------------ std::terminate() detected at Mon Oct 16 23:13:15 2023 ------------------------------------------------------------------------ Configuration: Crash Decoding : Disabled Current Visual : None Default Encoding : UTF-8 GNU C Library : 2.17 stable MATLAB Architecture: glnxa64 MATLAB Root : /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84 MATLAB Version : 8.4.0.150421 (R2014b) Operating System : Linux 5.4.0-153-generic #170-Ubuntu SMP Fri Jun 16 13:43:31 UTC 2023 x86_64 Processor ID : x86 Family 143 Model 49 Stepping 0, AuthenticAMD Software OpenGL : 0 Virtual Machine : Java 1.7.0_11-b21 with Oracle Corporation Java HotSpot(TM) 64-Bit Server VM mixed mode Window System : No active display Fault Count: 2 Abnormal termination: Illegal instruction Register State (from fault): RAX = 00007fc9ad658000 RBX = 00007fc9ad664000 RCX = 000000000000000e RDX = 00007fca2bee7640 RSP = 00007fca2ee65100 RBP = 00000000000000cc RSI = 0000000000000000 RDI = 00007fca2ee651d0 R8 = 0000000000000380 R9 = 00007fc9ad664000 R10 = 0000000000001368 R11 = 0000000000000678 R12 = 000000000000001c R13 = 00000000000000cc R14 = 000000000000000c R15 = 000000000000001c RIP = 00007fc9ba8fce02 EFL = 0000000000010212 CS = 0033 FS = 0000 GS = 0000 Stack Trace (from fault): [ 0] 0x00007fc9ba8fce02 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/mkl.so+30535170 mkl_blas_cnr_def_dgemm_kernel_bdz+00000210 [ 1] 0x00007fc9ba8f4665 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/mkl.so+30500453 mkl_blas_cnr_def_xdgemm_bdz+00001381 [ 2] 0x00007fc9ba8f7097 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/mkl.so+30511255 mkl_blas_cnr_def_xdgemm+00004087 [ 3] 0x00007fc9b8e8b674 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/mkl.so+02807412 [ 4] 0x00007fc9b8e87db3 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/mkl.so+02792883 mkl_blas_dgemm+00001475 [ 5] 0x00007fc9b8d2ae8b /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/mkl.so+01363595 DGEMM+00000363 [ 6] 0x00007fca089afd16 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmathlinalg.so+01424662 [ 7] 0x00007fca08a03715 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmathlinalg.so+01767189 [ 8] 0x00007fca08a038d2 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmathlinalg.so+01767634 [ 9] 0x00007fca08a03e39 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmathlinalg.so+01769017 [ 10] 0x00007fca38ffc2d5 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00545493 [ 11] 0x00007fca38fe3e34 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00446004 _ZN13Mfh_MATLAB_fn11dispatch_fhEiPP11mxArray_tagiS2_+00000244 [ 12] 0x00007fca3846b3a3 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+05243811 [ 13] 0x00007fca38399c41 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04385857 [ 14] 0x00007fca3839a9be /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04389310 [ 15] 0x00007fca383a67e9 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04437993 [ 16] 0x00007fca383a6953 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04438355 [ 17] 0x00007fca384de284 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+05714564 [ 18] 0x00007fca382fd26a /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03744362 [ 19] 0x00007fca3837252e /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04224302 [ 20] 0x00007fca39038329 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00791337 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000697 [ 21] 0x00007fca38ff9e07 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00536071 [ 22] 0x00007fca38277164 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03195236 inFullFevalFcn+00000196 [ 23] 0x00007fca38ffc2d5 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00545493 [ 24] 0x00007fca38fe3e34 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00446004 _ZN13Mfh_MATLAB_fn11dispatch_fhEiPP11mxArray_tagiS2_+00000244 [ 25] 0x00007fca38522e6b /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+05996139 [ 26] 0x00007fca38524809 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+06002697 [ 27] 0x00007fca3852503c /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+06004796 [ 28] 0x00007fca383991a3 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04383139 [ 29] 0x00007fca383a686e /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04438126 [ 30] 0x00007fca383a6953 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04438355 [ 31] 0x00007fca384de284 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+05714564 [ 32] 0x00007fca382fd26a /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03744362 [ 33] 0x00007fca3837252e /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04224302 [ 34] 0x00007fca39038329 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00791337 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000697 [ 35] 0x00007fca38348b70 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04053872 [ 36] 0x00007fca382f8e02 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03726850 [ 37] 0x00007fca382fb022 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03735586 [ 38] 0x00007fca38300f87 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03760007 [ 39] 0x00007fca382fc6ff /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03741439 [ 40] 0x00007fca382fd334 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03744564 [ 41] 0x00007fca3837252e /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04224302 [ 42] 0x00007fca39038329 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00791337 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000697 [ 43] 0x00007fca38348b70 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04053872 [ 44] 0x00007fca382f8e02 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03726850 [ 45] 0x00007fca382fb022 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03735586 [ 46] 0x00007fca38300f87 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03760007 [ 47] 0x00007fca382fc6ff /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03741439 [ 48] 0x00007fca382fd334 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03744564 [ 49] 0x00007fca3837252e /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04224302 [ 50] 0x00007fca39038329 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00791337 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000697 [ 51] 0x00007fca38348b70 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04053872 [ 52] 0x00007fca382f8e02 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03726850 [ 53] 0x00007fca382fb022 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03735586 [ 54] 0x00007fca38300f87 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03760007 [ 55] 0x00007fca382fc6ff /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03741439 [ 56] 0x00007fca382fd334 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03744564 [ 57] 0x00007fca3837252e /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04224302 [ 58] 0x00007fca39038329 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00791337 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000697 [ 59] 0x00007fca38522ef4 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+05996276 [ 60] 0x00007fca38524809 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+06002697 [ 61] 0x00007fca3852503c /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+06004796 [ 62] 0x00007fca383991a3 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04383139 [ 63] 0x00007fca383a686e /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04438126 [ 64] 0x00007fca383a6953 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04438355 [ 65] 0x00007fca384de284 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+05714564 [ 66] 0x00007fca382fb3c9 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03736521 [ 67] 0x00007fca38300f87 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03760007 [ 68] 0x00007fca382fc6ff /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03741439 [ 69] 0x00007fca382fd334 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03744564 [ 70] 0x00007fca3837252e /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+04224302 [ 71] 0x00007fca39038329 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_dispatcher.so+00791337 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000697 [ 72] 0x00007fca38325bf0 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03910640 [ 73] 0x00007fca38325449 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03908681 [ 74] 0x00007fca38268fd6 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03137494 inCallFcnWithTrap+00000086 [ 75] 0x00007fca382ecc0b /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03677195 [ 76] 0x00007fca3826a560 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwm_interpreter.so+03143008 _Z44inCallFcnWithTrapInDesiredWSAndPublishEventsiPP11mxArray_tagiS1_PKcbP15inWorkSpace_tag+00000096 [ 77] 0x00007fca38af8e84 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwiqm.so+00650884 _ZN3iqm15BaseFEvalPlugin7executeEP15inWorkSpace_tagRN5boost10shared_ptrIN14cmddistributor17IIPCompletedEventEEE+00000356 [ 78] 0x00007fca398fb0d9 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmcr.so+00712921 [ 79] 0x00007fca38af4926 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwiqm.so+00633126 [ 80] 0x00007fca38ae07dd /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwiqm.so+00550877 [ 81] 0x00007fca460e8edb /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+01707739 [ 82] 0x00007fca35e4e63d /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwuix.so+00230973 [ 83] 0x00007fca461b01ea /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+02523626 [ 84] 0x00007fca461b0524 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+02524452 [ 85] 0x00007fca461ac07f /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+02506879 [ 86] 0x00007fca461b14b5 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+02528437 [ 87] 0x00007fca461b18e7 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+02529511 [ 88] 0x00007fca461b1fc0 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+02531264 _Z25svWS_ProcessPendingEventsiib+00000080 [ 89] 0x00007fca398e8248 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmcr.so+00635464 [ 90] 0x00007fca398e8564 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmcr.so+00636260 [ 91] 0x00007fca398d4cdd /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmcr.so+00556253 [ 92] 0x00007fca46e0fea5 /lib64/libpthread.so.0+00032421 [ 93] 0x00007fca46b38b0d /lib64/libc.so.6+01043213 clone+00000109 Abnormal termination: std::terminate() Register State (captured): RAX = fffffffffffffff0 RBX = 00007fca424814e8 RCX = 0000000000000000 RDX = 00007fca42470758 RSP = 00007fca2ee6ae20 RBP = 00007fca2ee6b1e0 RSI = 00007fca42224fb3 RDI = 00007fca2ee6ae30 R8 = 0000000000000000 R9 = 00007fca46b8dd40 R10 = 0000000000000000 R11 = 00007fca46b8dd40 R12 = 00007fca42491520 R13 = 00007fca2ee6be20 R14 = 00007fca2ee6be00 R15 = 00007fca2ee6c1e0 RIP = 00007fca42183f4e EFL = 0000000000000000 CS = 0000 FS = 0000 GS = 0000 Stack Trace (captured): [ 0] 0x00007fca42183f4e /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwfl.so+00966478 _ZN2fl4diag5linux12context_base12capture_dataEv+00000030 [ 1] 0x00007fca42181424 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwfl.so+00955428 [ 2] 0x00007fca399210f5 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmcr.so+00868597 [ 3] 0x00007fca399232ca /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmcr.so+00877258 [ 4] 0x00007fca399233c1 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmcr.so+00877505 [ 5] 0x00007fca39923743 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmcr.so+00878403 [ 6] 0x00007fca399237b3 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmcr.so+00878515 [ 7] 0x00007fca47599386 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/sys/os/glnxa64/libstdc++.so.6+00385926 [ 8] 0x00007fca475993b3 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/sys/os/glnxa64/libstdc++.so.6+00385971 [ 9] 0x00007fca47599626 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/sys/os/glnxa64/libstdc++.so.6+00386598 __cxa_rethrow+00000070 [ 10] 0x00007fca38af4da7 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwiqm.so+00634279 [ 11] 0x00007fca38ae07dd /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwiqm.so+00550877 [ 12] 0x00007fca460e8edb /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+01707739 [ 13] 0x00007fca35e4e63d /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwuix.so+00230973 [ 14] 0x00007fca461b01ea /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+02523626 [ 15] 0x00007fca461b0524 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+02524452 [ 16] 0x00007fca461ac07f /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+02506879 [ 17] 0x00007fca461b14b5 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+02528437 [ 18] 0x00007fca461b18e7 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+02529511 [ 19] 0x00007fca461b1fc0 /work/CaPTk/bin/install/appdir/usr/bin/../libexec/MCR/v84/bin/glnxa64/libmwservices.so+02531264 _Z25svWS_ProcessPendingEventsiib+00000080 [ 20] 0x00007fca398e8248 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmcr.so+00635464 [ 21] 0x00007fca398e8564 /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmcr.so+00636260 [ 22] 0x00007fca398d4cdd /work/CaPTk/bin/install/appdir/usr/libexec/MCR/v84/bin/glnxa64/libmwmcr.so+00556253 [ 23] 0x00007fca46e0fea5 /lib64/libpthread.so.0+00032421 [ 24] 0x00007fca46b38b0d /lib64/libc.so.6+01043213 clone+00000109 If this problem is reproducible, please submit a Service Request via: http://www.mathworks.com/support/contact_us/ A technical support engineer might contact you with further information. Thank you for your help.** This crash report has been saved to disk as /root/matlab_crash_dump.727-2 ** MATLAB is exiting because of fatal error Libra did not succeed. Please recheck. ```
AriBunnell commented 3 months ago

This issue has been resolved by moving to a machine with Intel processors, rather than AMD.