Cloning CaPTk on a Linux system takes very long

CBICA / CaPTk

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk

https://www.cbica.upenn.edu/captk

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Cloning CaPTk on a Linux system takes very long #303

Closed ashishsingh18 closed 4 years ago

ashishsingh18 commented 5 years ago

Describe the bug Fresh cloning of Captk on a Linux system takes a very long time (several hours)

To Reproduce Fresh clone of Captk on a clean system

OS: Ubuntu 18.04.1 x64

sarthakpati commented 5 years ago

I wonder if this is a factor of the initial repo depth? I am seeing the git clone command on Travis (all platforms) is taking ~250 seconds for a depth of 50.

MarkBergman-cbica commented 5 years ago

Was that a simple clone, or with any options (ie., depth)?

This is likely due to network bandwidth and any issues with Github, not with the content of our repo.

time git clone https://github.com/CBICA/CaPTk.git
Cloning into 'CaPTk'...
remote: Enumerating objects: 7628, done.
remote: Total 7628 (delta 0), reused 0 (delta 0), pack-reused 7628
Receiving objects: 100% (7628/7628), 139.23 MiB | 28.86 MiB/s, done.
Resolving deltas: 100% (4458/4458), done.

real    0m6.447s
user    0m3.970s
sys     0m1.216s

sarthakpati commented 4 years ago

Please see the usage of the environment variable GIT_LFS_SKIP_SMUDGE in https://github.com/CBICA/CaPTk/blob/master/azure-pipelines.yml