Comets 1.3. Display in interactive mode needs modification

[steven-moore]

In the latest update, the display of results onscreen is using the wrong column of metabolite names in interactive mode. The display is correct, however, in batch mode. Screenshots of each are below.

Interactive mode:

Batch mode (model age.1):

[steven-moore]

In addition, the correlation estimates and p-values are sometimes not rounded appropriately. I believe this happens primarily when there is a problem estimating the correlations for at least one metabolite, per the example below.

[wobenshain]

The names issue is in the package. We treat the output the same way regardless of whether it's interactive or model and for some reason the interactive mode outputs the 'outcome' variable to match the 'outcomespec' variable.

[steven-moore]

Thanks for clarifying--it's switched to Ewy

[wobenshain]

Number format issues has been patched. It looks like the backend had been switched to returning strings (instead of numerics), at least for some results. I added code for the correlation value as well as patching the pvalue to account for strings.

[steven-moore]

OK, looks good. The correlations, however, should show three digits, per prior code.

[steven-moore]

To clarify, the correlations should NOT be in scientific notation, but should be listed to three digits after the decimal.

[ellatemprosa]

fixed this issue with commit https://github.com/CBIIT/R-cometsAnalytics/commit/cc16fd209dba6d3518913d2aadbb1a0b43ab6f0b