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CBIIT / R-cometsAnalytics

R package development for COMETS Analytics
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regenerated NAMESPACE using roxygen2 #6

Closed park-brian closed 8 years ago

park-brian commented 8 years ago

This pull request resolves an error that occurs when installing the COMETS package:

> git clone https://github.com/CBIIT/R-cometsAnalytics.git
> R CMD INSTALL R-cometsAnalytics

  * installing to library ‘/home/ncianalysis/R/x86_64-redhat-linux-gnu-library/3.3’
  * installing *source* package ‘COMETS’ ...

  [...]

  ** testing if installed package can be loaded
  Error in namespaceExport(ns, exports) : undefined exports: runShiny
  Error: loading failed
  Execution halted
  ERROR: loading failed
  * removing ‘/home/ncianalysis/R/x86_64-redhat-linux-gnu-library/3.3/COMETS’

Running roxygen2 updates the NAMESPACE file and lets me install the package:

> cd R-cometsAnalytics
> R -q -e "devtools::document()"

  Updating COMETS documentation
  Loading COMETS
  Writing NAMESPACE
  Warning message:
  In setup_ns_exports(pkg, export_all) :
    Objects listed as exports, but not present in namespace: runShiny

> R CMD INSTALL .
  * installing *source* package ‘COMETS’ ...

  [...]

  ** testing if installed package can be loaded
  * DONE (COMETS)