Closed erm156 closed 1 year ago
Link
repository
url
metadata
JIRA ticket: https://tracker.nci.nih.gov/browse/ICDC-3030
example query:
{ studyLinks(study_code: "GLIOMA01") { repository, url, metadata { ... on IDCMetadata { collection_id, cancer_type, date_updated, description, doi, image_types, location, species, subject_count, supporting_data } ... on TCIAMetadata { Collection, total_patient_IDs, unique_modalities, unique_bodyparts_examined, total_image_counts } } } }
response:
{ "data": { "studyLinks": [ { "repository": "IDC", "url": "https://portal.imaging.datacommons.cancer.gov/explore/filters/?collection_id=icdc_glioma", "metadata": { "collection_id": "icdc_glioma", "cancer_type": "Glioma", "date_updated": "2022-10-10", "description": "ICDC-Glioma [https://doi.org/10.7937/TCIA.SVQT-Q016] contains treatment-naïve naturally-occurring canine glioma participants from the Integrated Canine Data Commons [https://caninecommons.cancer.gov/#/study/GLIOMA01]. Brain radiology (57/81 participant animals) and H&E-stained biopsy or necropsy pathology (76/81 participants) are classified by veterinary and physician neuropathologists. Please see the wiki ICDC-Glioma [https://doi.org/10.7937/TCIA.SVQT-Q016] to learn more about the images and to obtain any supporting metadata for this collection.", "doi": "10.7937/tcia.svqt-q016", "image_types": "MR", "location": "Head", "species": "Canine", "subject_count": 57, "supporting_data": "Genomics" } }, { "repository": "TCIA", "url": "https://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1&CollectionCriteria=ICDC-Glioma", "metadata": { "Collection": "ICDC-Glioma", "total_patient_IDs": 57, "unique_modalities": [ "MR" ], "unique_bodyparts_examined": [ "HEAD" ], "total_image_counts": 17797 } } ] } }
This will throw an error when a study code is not found (moved this conditional to before the API calls to IDC/TCIA).
Link
types, which containrepository
,url
andmetadata
fields)JIRA ticket: https://tracker.nci.nih.gov/browse/ICDC-3030
example query:
response: