CC-HIC / ccanonym

Critical care data anonymisation package
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ccd_demographic_spell / table completes with warnings #48

Open DocEd opened 6 years ago

DocEd commented 6 years ago

ccd_demographic_spell is called as part of the anonymisation procedure.

This completes with multiple warnings that don't produce a demographic table correctly. This issue seems to be an upstream component of why the anonymser fails.

There are a lot of interdependencies between ccanonym and cleanEHR and it's worth noting that a lot of cleanEHR is based around directly parsing data from xml - this has already been parsed so some of the functions in play are superfluous and may be producing unexpected outputs as a result. xmlTime2POSIX for example.