Adding NCBI assembly accession and 'Assembly Level' search results

CCB-SB / plsdb

PLSDB pipeline to collect bacterial plasmids from NCBI

https://ccb-microbe.cs.uni-saarland.de/plsdb/

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Adding NCBI assembly accession and 'Assembly Level' search results #25

Closed wtmatlock closed 10 months ago

wtmatlock commented 10 months ago

Hi team,

It would be very helpful to have both the NCBI assembly accession and the 'Assembly Level' in the https://ccb-microbe.cs.uni-saarland.de/plsdb/plasmids/ search UI. Specifically, it would be useful to record whether the Assembly Level is listed as a 'Complete Genome' or not, for those interested in plasmid-chromosome and plasmid-plasmid relationships.

Thanks,

Will

wtmatlock commented 10 months ago

I've just noticed that you include the Assembly UID and Assembly Level on your extended metadata table on Figshare--thank you.

Do you have plans to update this for the most recent database, as I currently only see it for 2021_06_23_v2.?

wtmatlock commented 10 months ago

Just found this also--you are all brilliant! Thank you for such a fabulous resource!!