Closed ayabrown closed 3 years ago
Dear @ayabrown,
You can extract the FASTA sequences from the BLAST database which is included in the download.
Assuming that you have downloaded and decompressed the PLSDB archive, and BLAST is installed:
# extract seqs from blastdb
blastdbcmd -entry all -db "plsdb.fna" -out "plsdb.fasta"
Let me know if you have more questions.
Best, Valentina
Worked beautifully, Thanks!
Hi, Thanks for this wonderful collection of plasmids DNA. I would like to use the collection as a bowtie index and not a blast db, its there a way to download just the Fasta seqs of the plasmids?
Thanks in advance.
Aya