jaccard time out; max out on CPUS

CCBR / ASPEN

CCBR pipeline for preliminary QC and peak calling from ATACseq datasets 🌲

https://ccbr.github.io/ASPEN/

MIT License

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Closed slsevilla closed 1 year ago

slsevilla commented 1 year ago

Running jaccard on recent mmul dataset has lead to time out of samples. Current resource allocation should be adjusted Current resources

        "jaccard": {
                "mem": "48g",
                "threads": "2",
                "time": "01-00:00:00"
        },

Proposed changes

        "jaccard": {
                "mem": "40g",
                "threads": "32",
                "time": "02-00:00:00"
        },

Memory and time can probably be dropped with the increase in threads; will follow up after re-running current samples through with these changes.

slsevilla commented 1 year ago

Jobs completed with a run time of 1-16:34:45. Will leave the 2 day walltime for future projects. commit 6ddd749fbd9e3c09c83f2dbd12e97478adb24c89