slsevilla
commented
1 year ago | tool | version on Biowulf | Biowulf8 status |
|---|---|---|
| bedtools | bedtools/2.30.0 | available |
| bedops | bedops/2.4.40 | need to update to 2.4.41 |
| bowtie2 | bowtie/2-2.4.2 | need to update to 2-2.4.5 |
| cutadapt | cutadapt/1.18 | need to update to 4.0 |
| fastqc | fastqc/0.11.9 | available |
| fastq_screen | fastq_screen/0.15.2 | available |
| fastxtoolkit | fastxtoolkit/0.0.14 | available |
| homer | homer/4.11.1 | available |
| macs2 | macs/2.2.7.1 | available |
| multiqc | multiqc/1.14 | available |
| perl | perl/5.34.0 | available |
| picard | picard/2.26.9 | need to update to 2.27.3 |
| python37 | python/3.7 | need to update to 3.9 |
| R | R/4.2.2 | available |
| rose | ROSE/1.3.1 | available |
| samtools | samtools/1.15 | available |
| seacr | seacr/1.4-beta.2 | available |
| ucsc | ucsc/407 | not available - need solution |
| gopeaks | /data/CCBR_Pipeliner/Pipelines/gopeaks/gopeaks | available |
| fastq_val | /data/CCBR_Pipeliner/iCLIP/bin/fastQValidator | available |
Describe what enhancement you'd like to see. All CCBR pipelines need to prepare for the transition to Biowulf8. Check module list and update versions as needed, or create new issues for modules not available to either dockerize / request for transfer.