CCBR / CCBR_tobias

Tobias implementation for ATAC seq data.
MIT License
1 stars 1 forks source link

switch from modules to containers entirely #5

Open kelly-sovacool opened 9 months ago

kelly-sovacool commented 9 months ago

biowulf deprecates module versions over time, which breaks our pipelines. switching to containers will make this pipeline more robust.

kelly-sovacool commented 8 months ago

We're already using a container for the TOBIAS rules, so this should be fairly straightforward.

https://github.com/CCBR/CCBR_tobias/blob/94784d877a38bd45d00830407e50cab1b62a606c/config/config.yaml#L19-L20

https://github.com/CCBR/CCBR_tobias/blob/94784d877a38bd45d00830407e50cab1b62a606c/tobias.snakefile#L186