stub run local & on github actions hangs indefinitely

CCBR / CHAMPAGNE

CHromAtin iMmuno PrecipitAtion sequencinG aNalysis pipEline

https://ccbr.github.io/CHAMPAGNE/

MIT License

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stub run local & on github actions hangs indefinitely #171

Open kelly-sovacool opened 10 months ago

kelly-sovacool commented 10 months ago

The stub run hangs after completion -- nextflow doesn't recognize the processes are all done. This happens on github actions and locally. Doesn't happen on biowulf with lots of memory.

cd tests/cli
champagne init
champagne run -stub -c ci_stub.config --max_cpus 2 --max_memory 6.GB

kelly-sovacool commented 10 months ago

the action might hang if it runs out of memory https://github.com/actions/runner/issues/1326#issuecomment-1828361309