in @wilfriedguiblet's output directory: /data/CCBR/charlie_test_wil/charlie2
from snakemake log:
Error executing rule star1p on cluster (jobid: 8, external: 39292146, jobscript: /vf/users/CCBR/charlie_test_wil/charlie2/.snakemake/tmp.cw25d5ms/snakejob.star1p.8.sh). For error details see the cluster log and the log files of the involved rule(s).
end of the rule's slurm log (logs/39273613.39292146.star1p.sample=GI1_T.err):
[Fri Oct 25 15:21:07 2024]
Finished job 0.
1 of 1 steps (100%) done
So the rule succeeded but the overall slurm job failed??
@kopardev I think this is a separate issue from #123. It did not try to re-run star1p.
in @wilfriedguiblet's output directory:
/data/CCBR/charlie_test_wil/charlie2from snakemake log:
end of the rule's slurm log (
logs/39273613.39292146.star1p.sample=GI1_T.err):So the rule succeeded but the overall slurm job failed??
@kopardev I think this is a separate issue from #123. It did not try to re-run
star1p.