container for ngs-qc generator

CCBR / Dockers

A collection of Dockerfiles to facilitate reproducibility across computing environments.

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container for ngs-qc generator #11

Closed kelly-sovacool closed 1 year ago

kelly-sovacool commented 1 year ago

The old chip-seq workflow points to /data/CCBR_Pipeliner/db/PipeDB/ChIPseq/NGSQC_linux_x86_64 as the binary file to run ngs-qc. The tool's online docs point to a galaxy portal, and it's not clear to me how this was / could be installed as a CLI.

kopardev commented 1 year ago

@kelly-sovacool Use docker "nciccbr/ccbr_ngsqc_0.31:v1" both ngsqc and NGSQC_linux_x86_64 have been added to PATH