Command error:
Traceback (most recent call last):
File "/usr/local/bin/plotFingerprint", line 12, in <module>
main(args)
File "/usr/local/lib/python3.8/dist-packages/deeptools/plotFingerprint.py", line 476, in main
syntheticJSD = getSyntheticJSD(num_reads_per_bin[:, idx])
File "/usr/local/lib/python3.8/dist-packages/deeptools/plotFingerprint.py", line 243, in getSyntheticJSD
chip = np.zeros(MAXLEN, dtype=np.int)
File "/usr/local/lib/python3.8/dist-packages/numpy/__init__.py", line 305, in __getattr__
raise AttributeError(__former_attrs__[attr])
AttributeError: module 'numpy' has no attribute 'int'.
`np.int` was a deprecated alias for the builtin `int`. To avoid this error in existing code, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
kelly-sovacool
commented
1 year ago
@kopardev Deeptools v3.5.3 which was released just yesterday fixes a numpy deprecation error in the plotFingerprint command.
The error message which occurs in v3.5.2: