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CCBR
/
LOGAN
https://ccbr.github.io/LOGAN/
MIT License
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Strelka GT
#55
dnousome
opened
2 weeks ago
0
CNV issues
#54
dnousome
opened
2 weeks ago
0
Annotation of CNV/SV
#53
dnousome
opened
3 weeks ago
0
Fixes
#52
dnousome
closed
3 weeks ago
0
Fix docker
#51
dnousome
closed
1 month ago
0
revert: lofreq separate docker
#50
dnousome
closed
1 month ago
0
Feat sage
#49
dnousome
closed
1 month ago
0
Add Sage variant caller
#48
dnousome
opened
1 month ago
0
CNV callers
#47
dnousome
closed
1 month ago
0
CNV calling flags
#46
dnousome
closed
1 month ago
0
Fix octopus
#45
dnousome
closed
1 month ago
0
LOGAN seg fault
#44
dnousome
opened
1 month ago
0
Feat hg19
#43
dnousome
closed
1 month ago
0
fix: fixed container for annotsv
#42
dnousome
closed
2 months ago
0
Set default regions for hg38/mm10 when bed not specified
#41
dnousome
opened
2 months ago
0
AnnotSV Docker Image annotations not loading
#40
dnousome
closed
2 months ago
1
Feat indelrealign
#39
dnousome
closed
2 months ago
0
Indel realignment
#38
dnousome
closed
2 months ago
1
fix: typo in docker
#37
dnousome
closed
3 months ago
0
feat: docker files build
#36
dnousome
closed
3 months ago
0
CRAM Compression
#35
dnousome
opened
4 months ago
0
Nextflow CCBR Template
#34
dnousome
closed
3 months ago
0
validate variant calls with seqc2 consortium data
#33
kelly-sovacool
opened
4 months ago
0
create DAG from nextflow
#32
kelly-sovacool
opened
4 months ago
0
support optional dragen processor on biowulf
#31
kelly-sovacool
opened
4 months ago
2
compare tools for SNV, Indels, SV, EC-DNA vs GDC pipeline
#30
kelly-sovacool
opened
4 months ago
2
update citation file with Zenodo DOI after we cut the next release
#29
kelly-sovacool
opened
5 months ago
0
fix: vcf input order
#28
samarth8392
closed
5 months ago
0
Citation updates
#27
kelly-sovacool
closed
5 months ago
0
Fix cli citation flag
#26
kelly-sovacool
closed
5 months ago
0
Feat nftemplate
#25
dnousome
closed
6 months ago
0
Dev/feature svcnv
#24
dnousome
closed
6 months ago
0
Dev/feature svcnv
#23
dnousome
closed
7 months ago
0
fix: docker update
#22
dnousome
closed
7 months ago
0
Dev/feature svcnv
#21
dnousome
closed
7 months ago
0
Dev/feature svcnv
#20
dnousome
closed
7 months ago
0
Update docker java version
#19
dnousome
closed
7 months ago
0
Configure pre-commit
#18
kelly-sovacool
closed
7 months ago
0
feat: run spooker on workflow completion
#17
kelly-sovacool
closed
7 months ago
0
Implement Python-based CLI
#16
kelly-sovacool
closed
6 months ago
0
fix: refactor directory structure
#15
kelly-sovacool
closed
6 months ago
0
refactor directory structure
#14
kelly-sovacool
closed
6 months ago
0
Docker
#13
dnousome
closed
7 months ago
0
Dev/feature svcnv
#12
dnousome
closed
8 months ago
0
fix: permissions for svaba
#11
dnousome
closed
8 months ago
0
Docker
#10
dnousome
closed
8 months ago
0
Docker base Programs
#9
dnousome
opened
8 months ago
1
Feature nextflow
#8
dnousome
closed
8 months ago
0
QC Improvements
#7
dnousome
opened
8 months ago
0
Additional changes to Tumor only calling
#6
dnousome
closed
9 months ago
0
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