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CCBR
/
LOGAN
https://ccbr.github.io/LOGAN/
MIT License
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FFPE Filtering
#67
dnousome
opened
6 days ago
0
Deepsomatic
#66
dnousome
opened
6 days ago
0
Add SVCallers: gridss and CNV: cnvkit,ascat
#65
dnousome
opened
1 week ago
0
docs: Update readme
#64
dnousome
closed
3 months ago
0
Build DV/Bcftools/GLnexus docker
#63
dnousome
opened
3 months ago
0
"logan init" didn't work -- fix README install instructions
#62
HYan-lei
opened
3 months ago
2
add spooker
#61
kelly-sovacool
closed
3 months ago
1
fix: strelka convert gt
#60
dnousome
closed
4 months ago
0
Hg38 Genomes supported
#59
dnousome
opened
4 months ago
0
Create consistent order of somatic calls
#58
dnousome
closed
4 months ago
1
Add Flowchart
#57
dnousome
opened
4 months ago
0
CNV and GT fixes
#56
dnousome
closed
4 months ago
1
Strelka GT
#55
dnousome
closed
4 months ago
0
CNV issues
#54
dnousome
closed
4 months ago
1
Annotation of CNV/SV
#53
dnousome
closed
4 months ago
1
Fixes
#52
dnousome
closed
5 months ago
0
Fix docker
#51
dnousome
closed
6 months ago
0
revert: lofreq separate docker
#50
dnousome
closed
6 months ago
0
Feat sage
#49
dnousome
closed
6 months ago
0
Add Sage variant caller
#48
dnousome
opened
6 months ago
0
CNV callers
#47
dnousome
closed
6 months ago
0
CNV calling flags
#46
dnousome
closed
6 months ago
0
Fix octopus
#45
dnousome
closed
6 months ago
0
LOGAN seg fault
#44
dnousome
opened
6 months ago
0
Feat hg19
#43
dnousome
closed
6 months ago
0
fix: fixed container for annotsv
#42
dnousome
closed
7 months ago
0
Set default regions for hg38/mm10 when bed not specified
#41
dnousome
closed
1 week ago
0
AnnotSV Docker Image annotations not loading
#40
dnousome
closed
7 months ago
1
Feat indelrealign
#39
dnousome
closed
7 months ago
0
Indel realignment
#38
dnousome
closed
7 months ago
1
fix: typo in docker
#37
dnousome
closed
8 months ago
0
feat: docker files build
#36
dnousome
closed
8 months ago
0
CRAM Compression
#35
dnousome
opened
8 months ago
0
Nextflow CCBR Template
#34
dnousome
closed
8 months ago
0
validate variant calls with seqc2 consortium data
#33
kelly-sovacool
opened
9 months ago
0
create DAG from nextflow
#32
kelly-sovacool
opened
9 months ago
0
support optional dragen processor on biowulf
#31
kelly-sovacool
opened
9 months ago
2
compare tools for SNV, Indels, SV, EC-DNA vs GDC pipeline
#30
kelly-sovacool
opened
9 months ago
2
update citation file with Zenodo DOI after we cut the next release
#29
kelly-sovacool
opened
10 months ago
0
fix: vcf input order
#28
samarth8392
closed
10 months ago
0
Citation updates
#27
kelly-sovacool
closed
10 months ago
0
Fix cli citation flag
#26
kelly-sovacool
closed
10 months ago
0
Feat nftemplate
#25
dnousome
closed
11 months ago
0
Dev/feature svcnv
#24
dnousome
closed
11 months ago
0
Dev/feature svcnv
#23
dnousome
closed
11 months ago
0
fix: docker update
#22
dnousome
closed
12 months ago
0
Dev/feature svcnv
#21
dnousome
closed
12 months ago
0
Dev/feature svcnv
#20
dnousome
closed
12 months ago
0
Update docker java version
#19
dnousome
closed
1 year ago
0
Configure pre-commit
#18
kelly-sovacool
closed
1 year ago
0
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