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CCBR / MOSuite

MultiOmicsSuite: R package for downstream multi-omics analysis
https://ccbr.github.io/reneeTools/
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feat: draw pca plot #6

Open kelly-sovacool opened 1 year ago

kelly-sovacool commented 1 year ago

see https://github.com/CCBR/Pipeliner/blob/master/Results-template/Scripts/Deseq2Report.Rmd

for a tidy style of running and plotting PCA, see https://github.com/CCBR/CHAMPAGNE/blob/efcc76f0c54977b881954168b2ccd7adae8086a0/bin/plot_jaccard.R#L11-L33

kelly-sovacool commented 1 year ago

get eigenvalues for first component, sort them, show top and bottom N genes