change fasta for hg19 - Githubissues

CCBR / RENEE

A comprehensive quality-control and quantification RNA-seq pipeline

https://CCBR.github.io/RENEE/

MIT License

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change fasta for hg19 #138

Closed kelly-sovacool closed 2 months ago

kelly-sovacool commented 3 months ago

hg19_19 & hg19_36

fasta from https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_19/GRCh37.p13.genome.fa.gz
gtf from https://www.gencodegenes.org/human/release_36lift37.html for hg19_36
add viruses and decoys from GDC https://gdc.cancer.gov/about-data/gdc-data-processing/gdc-reference-files

related to #129

kelly-sovacool commented 3 months ago

see scripts here for how these were built https://github.com/CCBR/build-renee-refs