CCBR / RENEE

A comprehensive quality-control and quantification RNA-seq pipeline
https://CCBR.github.io/RENEE/
MIT License
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ResourceWarning in v2.6 #160

Open kelly-sovacool opened 5 days ago

kelly-sovacool commented 5 days ago

warning message with v2.6:

cd /data/CCBR_Pipeliner/Pipelines/RENEE
./v2.6/bin/renee --version
Python version: 3.11.3
/data/CCBR_Pipeliner/db/PipeDB/Conda/envs/py311/lib/python3.11/glob.py:176: ResourceWarning: unclosed <socket.socket fd=5, family=2, type=1, proto=0, laddr=('0.0.0.0', 0)>
  with contextlib.closing(_iterdir(dirname, dir_fd, dironly)) as it:
ResourceWarning: Enable tracemalloc to get the object allocation traceback
renee v2.6.0-dev

this doesn't happen with v2.5:

./v2.5/bin/renee --version
[+] Loading singularity  4.0.3  on cn2066 
renee v2.5.12

It seems there's an opened file that never gets closed? https://stackoverflow.com/a/61373209