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CCBR / RENEE

A comprehensive quality-control and quantification RNA-seq pipeline
https://CCBR.github.io/RENEE/
MIT License
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`renee cache` -- broken path to containers #162

Closed kelly-sovacool closed 1 month ago

kelly-sovacool commented 1 month ago 
module load ccbrpipeliner/7
renee cache --sif-cache /data/CCBR_Pipeliner/SIFs/
[+] Loading singularity  4.1.5  on cn0056 
[+] Loading snakemake  7.32.4 
Python version: 3.11.3
RENEE (v2.6.0)
Traceback (most recent call last):
  File "/gpfs/gsfs10/users/CCBR_Pipeliner/Pipelines/RENEE/.v2.6.0/main.py", line 16, in <module>
    sys.exit(main())
             ^^^^^^
  File "/gpfs/gsfs10/users/CCBR_Pipeliner/Pipelines/RENEE/.v2.6.0/src/renee/__main__.py", line 1490, in main
    args.func(args)
  File "/gpfs/gsfs10/users/CCBR_Pipeliner/Pipelines/RENEE/.v2.6.0/src/renee/__main__.py", line 440, in cache
    with open(images, "r") as fh:
         ^^^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory: '/gpfs/gsfs10/users/CCBR_Pipeliner/Pipelines/RENEE/.v2.6.0/src/renee/config/containers/images.json'