`config.json` should only be generated if it doesnt exist

CCBR / RENEE

A comprehensive quality-control and quantification RNA-seq pipeline

https://CCBR.github.io/RENEE/

MIT License

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Closed kopardev closed 1 year ago

kopardev commented 1 year ago

Currently config.json is generated everytime renee is run:

initialization
dryrun
run, etc. It should be only generated at initialization, which may then be edited. Hence, it should NOT be regenerated and possibly overwritten!

kelly-sovacool commented 1 year ago

We had this same problem in XAVIER. Adding an if/else to only run setup() if runmode == 'init' should do the trick. https://github.com/CCBR/XAVIER/issues/29

kopardev commented 1 year ago

Fixed in #39